1 | <%@ page import="net.sf.basedb.core.*"%> |
---|
2 | <%@ page import="net.sf.basedb.clients.web.*"%> |
---|
3 | <%@ page import="net.sf.basedb.util.*"%> |
---|
4 | <%@ page import="java.util.*"%> |
---|
5 | |
---|
6 | <jsp:useBean id="inputDataBean" class="uk.ac.ebi.nugo.plugins.DataBean" scope="session" /> |
---|
7 | <!-- submits the form data back to the bean assuming that each form element is matched to a variable in the bean by the same name --> |
---|
8 | <jsp:setProperty name="inputDataBean" property="*" /> |
---|
9 | |
---|
10 | <% |
---|
11 | final SessionControl sc = Base.getExistingSessionControl(pageContext, true); |
---|
12 | final String ID = sc.getId(); |
---|
13 | final String requestId = request.getParameter("requestId"); |
---|
14 | |
---|
15 | %> |
---|
16 | |
---|
17 | <html> |
---|
18 | <head> |
---|
19 | |
---|
20 | <link rel="stylesheet" type="text/css" href="<%= request.getContextPath()%>/plugins/uk/ac/ebi/nugo/plugins/styles.css" /> |
---|
21 | <link rel="stylesheet" type="text/css" href="/base/include/styles/main.css"> |
---|
22 | <link rel="stylesheet" type="text/css" href="/base/include/styles/size_m.css"> |
---|
23 | |
---|
24 | <script language="JavaScript" src="<%= request.getContextPath()%>/include/scripts/main.js" type="text/javascript"></script> |
---|
25 | <script language="JavaScript" type="text/javascript"> |
---|
26 | |
---|
27 | //submits form |
---|
28 | function submit() |
---|
29 | { |
---|
30 | document.autogenerate.submit(); |
---|
31 | } |
---|
32 | |
---|
33 | //function to display or hide a given element |
---|
34 | function showItems(myItem) |
---|
35 | { |
---|
36 | //this is the ID of the item to hide |
---|
37 | var myItem = document.getElementById(myItem); |
---|
38 | //items are currently hidden, so display them |
---|
39 | myItem.style.display = "table-row"; |
---|
40 | } |
---|
41 | |
---|
42 | function hideItems(myItem) |
---|
43 | { |
---|
44 | //this is the ID of the item to hide |
---|
45 | var myItem = document.getElementById(myItem); |
---|
46 | //items are currently displayed, so hide them |
---|
47 | myItem.style.display = "none"; |
---|
48 | } |
---|
49 | |
---|
50 | function failImport() |
---|
51 | { |
---|
52 | var cf = confirm('Sorry - this scenario is not supported.'+ |
---|
53 | '\nPlease click OK to return to the form or Cancel to cancel your import.'); |
---|
54 | if(cf==true) |
---|
55 | { |
---|
56 | //do nothing |
---|
57 | } |
---|
58 | else |
---|
59 | { |
---|
60 | window.close(); |
---|
61 | } |
---|
62 | } |
---|
63 | |
---|
64 | </script> |
---|
65 | |
---|
66 | </head> |
---|
67 | <body> |
---|
68 | |
---|
69 | <h2>Tab2MAGE Import Wizard -- Additional Information for Autogenerate Mode</h2> |
---|
70 | <p> |
---|
71 | <form name="autogenerate" action="<%= request.getContextPath()%>/plugins/uk/ac/ebi/nugo/plugins/submit.jsp?ID=<%=ID%>"> |
---|
72 | <input type="hidden" name="ID" value="<%=ID%>"> |
---|
73 | <input type="hidden" name="requestId" value="<%=requestId%>"> |
---|
74 | |
---|
75 | |
---|
76 | <table cellpadding="10" width="100%" > |
---|
77 | |
---|
78 | <!-- rationale for sample pairing --> |
---|
79 | <tr> |
---|
80 | <td>What was the rationale for pairing samples?</td> |
---|
81 | <td class="input"> |
---|
82 | <select name="samplePairing" > |
---|
83 | <option>treated versus control</option> |
---|
84 | <option>normal versus diseased</option> |
---|
85 | <option onclick="failImport();">other</option> |
---|
86 | </select> |
---|
87 | </td> |
---|
88 | </tr> |
---|
89 | |
---|
90 | |
---|
91 | <!-- time course - yes or no? --> |
---|
92 | <tr> |
---|
93 | <td>Was the experiment a time course?</td> |
---|
94 | <td class="input"> |
---|
95 | |
---|
96 | <table class="noBorder" cellpadding="4"> |
---|
97 | <tr> |
---|
98 | <td class="noBorder"><input type="radio" id="timeCourseYes" name="timeCourse" value="yes" onclick="showItems('timeInputs1');showItems('timeInputs2');"></td> |
---|
99 | <td class="noBorder">yes</td> |
---|
100 | </tr> |
---|
101 | |
---|
102 | <tr> |
---|
103 | <td class="noBorder"><input type="radio" id="timeCourseNo" name="timeCourse" checked="checked" value="no" onclick="hideItems('timeInputs1');hideItems('timeInputs2');"></td> |
---|
104 | <td class="noBorder">no</td> |
---|
105 | </tr> |
---|
106 | </table> |
---|
107 | |
---|
108 | </td> |
---|
109 | </tr> |
---|
110 | |
---|
111 | |
---|
112 | |
---|
113 | |
---|
114 | |
---|
115 | <!-- time points input --> |
---|
116 | |
---|
117 | <tr id="timeInputs1" style="display:none"> |
---|
118 | <td>Please enter a list of your time points here, separated by semicolons.<p> |
---|
119 | Example: 0h;1h;12h;24h; |
---|
120 | </td> |
---|
121 | <td class="input"> |
---|
122 | <textarea name="timePoints"></textarea> |
---|
123 | </td> |
---|
124 | </tr> |
---|
125 | |
---|
126 | <!--proceed - yes or no? --> |
---|
127 | <tr id="timeInputs2" style="display:none"> |
---|
128 | <td>By default we assume a time based sample pairing between control and treatment groups. <p> |
---|
129 | Is this the case?</td> |
---|
130 | <td class="input"> |
---|
131 | |
---|
132 | <table class="noBorder" cellpadding="4"> |
---|
133 | <tr> |
---|
134 | <td class="noBorder"><input type="radio" id="proceedYes" name="proceed" value="yes"></td> |
---|
135 | <td class="noBorder">yes</td> |
---|
136 | </tr> |
---|
137 | |
---|
138 | <tr> |
---|
139 | <td class="noBorder"><input type="radio" id="proceedNo" name="proceed" value="no" onclick="failImport();"></td> |
---|
140 | <td class="noBorder">no</td> |
---|
141 | </tr> |
---|
142 | </table> |
---|
143 | |
---|
144 | </td> |
---|
145 | </tr> |
---|
146 | |
---|
147 | </table> |
---|
148 | |
---|
149 | |
---|
150 | </form> |
---|
151 | |
---|
152 | <table align="center" class="noBorder" cellspacing="5" cellpadding="5"> |
---|
153 | <tr class="noBorder"> |
---|
154 | <td id="next" width="50%" style="border-style: none;"> |
---|
155 | <div class="buttons" onmouseover="this.className='buttons_hover';" onmouseout="this.className='buttons';" onclick="submit()"> |
---|
156 | <div class="buttons_inner"> |
---|
157 | <table class="noBorder" cellspacing="0" cellpadding="0"> |
---|
158 | <tr class="noBorder"> |
---|
159 | <td style="border-style: none;"><img src="/base/images/gonext.gif" border="0"></td> |
---|
160 | <td style="border-style: none;">Next</td> |
---|
161 | </tr> |
---|
162 | </table> |
---|
163 | </div> |
---|
164 | </div> |
---|
165 | </td> |
---|
166 | <td id="close" width="50%" style="border-style: none;"> |
---|
167 | <div class="buttons" onmouseover="this.className='buttons_hover';" onmouseout="this.className='buttons';" onclick="window.close()"> |
---|
168 | <div class="buttons_inner"> |
---|
169 | <table class="noBorder" cellspacing="0" cellpadding="0"> |
---|
170 | <tr class="noBorder"> |
---|
171 | <td style="border-style: none;"><img src="/base/images/cancel.gif" border="0"></td> |
---|
172 | <td style="border-style: none;">Cancel</td> |
---|
173 | </tr> |
---|
174 | </table> |
---|
175 | </div> |
---|
176 | </div> |
---|
177 | </td> |
---|
178 | </tr> |
---|
179 | </table> |
---|
180 | |
---|
181 | |
---|
182 | </body> |
---|
183 | </html> |
---|