Changeset 1891


Ignore:
Timestamp:
Mar 1, 2013, 1:02:55 PM (7 years ago)
Author:
Nicklas Nordborg
Message:

References #425: Generate a lab protocol for RNA -> cDNA processing

No files are needed by lab intruments. The only file we want in BASE is the PDF file from the BioAnalyzer quality control in the mRNA step.

Location:
extensions/net.sf.basedb.reggie/trunk/resources
Files:
3 edited

Legend:

Unmodified
Added
Removed
  • extensions/net.sf.basedb.reggie/trunk/resources/index.jsp

    r1865 r1891  
    226226            <ul>
    227227            <li><a href="libprep/select_rna.jsp?ID=<%=ID%>">Create new mRNA plate</a>
    228             <li><a href="libprep/mrna_protocol.jsp?ID=<%=ID%>">Lab protocols and files for mRNA and cDNA preparation</a>
     228            <li><a href="libprep/mrna_protocol.jsp?ID=<%=ID%>">Lab protocols for mRNA and cDNA preparation</a>
    229229            <li><a href="libprep/mrna_registration.jsp?ID=<%=ID%>">mRNA registration and quality control results</a>
    230230            <li><a href="libprep/cdna_registration.jsp?ID=<%=ID%>">cDNA registration</a>
  • extensions/net.sf.basedb.reggie/trunk/resources/libprep/mrna_protocol.jsp

    r1865 r1891  
    5555    setFatalError(msg);
    5656  }
    57  
    58   var configurations = []; // TODO - get configurations by AJAX
    59   var exportHtml = makeButton('Sample names for BA (csv) -- TODO', "goExport('SAMPLE_NAMES_BA')");
    60   for (var i = 0; i < configurations.length; i++)
    61   {
    62     var config = configurations[i];
    63     exportHtml += makeButton('Run parameters: '+config.name + ' (xml)', "goExport('"+config.id+"')");
    64   }
    65   setInnerHTML('export', exportHtml);
    66 
    67 }
    68 
    69 function makeButton(title, onClick)
    70 {
    71   var btn = '';
    72   btn += '<span class="link" onclick="'+onClick+'">';
    73   btn += '<img src="../images/export.png">&nbsp;';
    74   btn += title+'</span><br>\n';
    75   return btn;
    76 }
    77 
     57}
    7858
    7959function getMRnaBioPlates()
     
    137117  <p:path><p:pathelement
    138118    title="Reggie" href="<%="../index.jsp?ID="+ID%>"
    139     /><p:pathelement title="Lab tracking protocol for mRNA and cDNA preparation"
     119    /><p:pathelement title="Lab protocols for mRNA and cDNA preparation"
    140120    /></p:path>
    141121
     
    208188        </td>
    209189      </tr>
    210       <tr valign="top">
    211         <td class="prompt">Export files</td>
    212         <td class="input" id="export" style="white-space: nowrap; line-height: 1.5em;">
    213           TODO
    214         </td>
    215         <td class="status" id="export.status"></td>
    216         <td class="help"><span id="protocol.message" class="message" style="display: none;"></span>
    217           Select what to export. Typically, you'll need the .... files.
    218         </td>
    219       </tr>
    220190      </table>
    221191    </td>
  • extensions/net.sf.basedb.reggie/trunk/resources/libprep/mrna_protocol2.jsp

    r1865 r1891  
    4848<html>
    4949<head>
    50   <title>Lab tracking protocol for mRNA and cDNA preparation</title>
     50  <title>Lab protocol for mRNA and cDNA preparation</title>
    5151  <link rel="SHORTCUT ICON" href="<%=home%>/images/pipette.png">
    5252  <link rel="stylesheet" type="text/css" href="<%=home %>/css/printable.css">
     
    460460  </div>
    461461 
    462   <h1>Lab tracking protocol for mRNA and cDNA preparation <span class="reggie">Reggie <%=reggie.getAbout().getVersion() %></span></h1>
     462  <h1>Lab protocol for mRNA and cDNA preparation <span class="reggie">Reggie <%=reggie.getAbout().getVersion() %></span></h1>
    463463
    464464  <table style="width: 100%; border: 0px;" class="protocolheader">
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