Ignore:
Timestamp:
Jan 7, 2008, 12:18:54 PM (13 years ago)
Author:
mbayer
Message:

added a fourth JSP page which will be used to let the user configure mappings from filenames to factor value combinations

File:
1 edited

Legend:

Unmodified
Added
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  • branches/uk_ac_ebi_Tab2MageImporter/jsp/uk/ac/ebi/nugo/plugins/hybridizations.jsp

    r525 r526  
    8585
    8686
    87 <form name="hybridizations"action="<%= request.getContextPath()%>/common/plugin/index.jsp" method="post">
     87<form name="hybridizations"action="<%= request.getContextPath()%>/plugins/uk/ac/ebi/nugo/plugins/mappings.jsp" method="post">
    8888<input type="hidden" name="ID" value="<%=ID%>"> <input type="hidden" name="cmd" value="SetParameters">
    8989<input type="hidden"name="requestID" value="<%=requestID%>">
     
    131131  <tr >
    132132    <td class="boldText">Microarray platform:</td>
    133     <td class="input"><select name="parameter:platform">
     133    <td class="input"><select name="platform">
    134134    <option >Affymetrix</option>
    135135    <option >Agilent</option>
     
    152152  <tr>
    153153    <td class="boldText">Experimental organism:</td>
    154     <td class="input"><input type="text" size="50" name="parameter:organism" value="Solanum tuberosum"/></td>
     154    <td class="input"><input type="text" size="50" name="organism" value="Solanum tuberosum"/></td>
    155155    <td>The full scientific name of the experimental organism used.</td>
    156156  </tr>
     
    159159  <tr>
    160160    <td class="boldText">Number of different arrays designs used:</td>
    161     <td class="input"><input type="text" size="3" name="parameter:numDesigns" value="1"/></td>
     161    <td class="input"><input type="text" size="3" name="numDesigns" value="1"/></td>
    162162    <td>If more than one array design was used in parallel, please specify the number here.
    163163    We assume that all samples are applied once to each array design</td>
     
    167167  <tr>
    168168    <td class="boldText">Dye-swap</td>
    169     <td class="input">yes <input type="radio" name="parameter:dyeSwap" value="yes"> no <input type="radio"
     169    <td class="input">yes <input type="radio" name="dyeSwap" value="yes"> no <input type="radio"
    170170      name="parameter:dyeSwap" value="no" checked="checked"> <br>
    171171     
     
    177177  <tr>
    178178    <td class="boldText">Reference sample</td>
    179     <td class="input">yes <input type="radio" name="parameter:refSample" value="yes" > no <input type="radio"
     179    <td class="input">yes <input type="radio" name="refSample" value="yes" > no <input type="radio"
    180180      name="parameter:refSample" value="no" checked="checked"></td>
    181181    <td>If you used a reference sample please indicate this here.</td>
     
    185185  <tr>
    186186    <td class="boldText">Number of treatment groups:</td>
    187     <td class="input"><input type="text" size="3" name="parameter:numTreatmentGroups" value="2"/></td>
     187    <td class="input"><input type="text" size="3" name="numTreatmentGroups" value="2"/></td>
    188188    <td>The number of permutations of factor values. <p>
    189189    Example: an experiment with 2 factors and 3 factor values in each will have 6 treatment groups (2 X 3).
     
    195195    <td class="boldText">Experimental factors:
    196196    </td>
    197     <td class="input"><textarea rows="7" cols="32" name="parameter:expFactors">Strain(mutant,wildtype)</textarea></td>
     197    <td class="input"><textarea rows="7" cols="32" name="expFactors">Strain(mutant,wildtype)<br/>Treament(treated,control)</textarea></td>
    198198    <td>Please list all experimental factors and value ranges using the following format (one per
    199199    line):<br>
     
    207207  <tr>
    208208    <td class="boldText">Number of subjects per group:</td>
    209     <td class="input"><input type="text" size="3" name="parameter:numReplicates" value="2"/></td>
     209    <td class="input"><input type="text" size="3" name="numReplicates" value="2"/></td>
    210210    <td>This is the number of biological replicates in each treatment group.</td>
    211211  </tr>
     
    214214  <tr>
    215215    <td class="boldText">Target tissues:</td>
    216     <td class="input"><textarea rows="2" cols="32" name="parameter:tissues">stem</textarea></td>
     216    <td class="input"><textarea rows="2" cols="32" name="tissues">stem</textarea></td>
    217217    <td>List all target tissues (as a comma separated list).<br>
    218218    Example: liver,heart</td>
     
    222222  <tr>
    223223    <td class="boldText">Sample pooling:</td>
    224     <td class="input">yes <input type="radio" name="parameter:pooling" value="yes"> no <input type="radio"
     224    <td class="input">yes <input type="radio" name="pooling" value="yes"> no <input type="radio"
    225225      name="parameter:pooling" value="no" checked="checked"></td>
    226226    <td>If the samples were pooled please indicate this here.</td>
     
    270270  <table align="center" class="noBorder" cellspacing="5"  cellpadding="5">
    271271  <tr class="noBorder">
    272     <td id="next" width="50%" style="border-style: none;"><div class="buttons" onmouseover="this.className='buttons_hover';" onmouseout="this.className='buttons';" onclick="submit()"><div class="buttons_inner"><table  class="noBorder" cellspacing="0" cellpadding="0"><tr  class="noBorder"><td style="border-style: none;"><img src="/base/images/gonext.gif" border="0"></td><td style="border-style: none;">Run Import</td></tr></table></div></div></td>
     272    <td id="next" width="50%" style="border-style: none;"><div class="buttons" onmouseover="this.className='buttons_hover';" onmouseout="this.className='buttons';" onclick="submit()"><div class="buttons_inner"><table  class="noBorder" cellspacing="0" cellpadding="0"><tr  class="noBorder"><td style="border-style: none;"><img src="/base/images/gonext.gif" border="0"></td><td style="border-style: none;">Next</td></tr></table></div></div></td>
    273273    <td id="close" width="50%" style="border-style: none;"><div class="buttons" onmouseover="this.className='buttons_hover';" onmouseout="this.className='buttons';" onclick="window.close()"><div class="buttons_inner"><table  class="noBorder" cellspacing="0" cellpadding="0"><tr  class="noBorder"><td style="border-style: none;"><img src="/base/images/cancel.gif" border="0"></td><td style="border-style: none;">Cancel</td></tr></table></div></div></td>  </tr>
    274274  </table>
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