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Status: assigned (3 matches)

Ticket Summary Owner Type Priority Component Resolution
#225 qQuantiler should select all assays as reference by default Jari Häkkinen Request major net.sf.basedb.normalizers
#267 Change qQuantilerNormalization underlying binary to use the new BFS format Jari Häkkinen task critical net.sf.basedb.normalizers
#268 Refactor qQuantileNormalizer plugin to use the ExternalProgramExecutor plugin Jari Häkkinen task major net.sf.basedb.normalizers

Status: closed (23 matches)
Ticket Summary Owner Type Priority Component Resolution
#118 Create qQuantile normalizer (aka cubic-spline normalizer) Jari Häkkinen task major net.sf.basedb.normalizers fixed
#120 Create a normalization plug-in package. Jari Häkkinen task major net.sf.basedb.normalizers fixed
#161 (net.sf.basedb.normalizers) Automatic download of BASE API Martin Svensson enhancement major net.sf.basedb.normalizers fixed
#166 (net.sf.basedb.normalizers) Automatic progression of version to source code using ant Martin Svensson defect major net.sf.basedb.normalizers fixed
#168 MD5 sum should be automatically generated for a package Martin Svensson task major net.sf.basedb.normalizers fixed
#176 Create release document Martin Svensson task major net.sf.basedb.normalizers fixed
#177 Add information about how to upgrade the normalization package. Martin Svensson task major net.sf.basedb.normalizers fixed
#184 qQuantileNormalizer should update progress bar Jari Häkkinen enhancement major net.sf.basedb.normalizers fixed
#186 qQuantileNormalizer method storeResult must be reimplemented Jari Häkkinen enhancement major net.sf.basedb.normalizers fixed
#187 qQuantileNormalizer should allow user to select the normaliztion reference assay set Jari Häkkinen enhancement major net.sf.basedb.normalizers fixed
#190 net.sf.basedb.normalizers: Add target that tries to build qQN if requested Jari Häkkinen task major net.sf.basedb.normalizers fixed
#191 net.sf.basedb.normalizers: qQN should support standard options ... Jari Häkkinen enhancement major net.sf.basedb.normalizers fixed
#195 net.sf.basedb.normalizers: Normalizers should ask user for how to calculate averages Martin Svensson enhancement major net.sf.basedb.normalizers fixed
#197 net.sf.basedb.normalizers: Add abort functionaly to qQuantileNormalizers Jari Häkkinen task major net.sf.basedb.normalizers fixed
#206 net.sf.basedb.normalizers: Make qQuantileNormalization handle missing values Jari Häkkinen enhancement major net.sf.basedb.normalizers fixed
#208 Revert changeset:1045 when yat bug http://dev.thep.lu.se/yat/ticket/535 is fixed Jari Häkkinen task major net.sf.basedb.normalizers fixed
#228 net.sf.basedb.normalizers: Normalizers should use ask BASE whether data is logged or not olle Request major net.sf.basedb.normalizers fixed
#247 net.sf.basedb.normalizers: qQuantileNormalization crashes when normalizing filtered bioassay sets Jari Häkkinen defect major net.sf.basedb.examples.extensions fixed
#280 Plug-in should suggest better job names Nicklas Nordborg enhancement major net.sf.basedb.normalizers fixed
#331 Updates required for BASE 3 Nicklas Nordborg task major net.sf.basedb.normalizers fixed
#541 net.sf.basedb.normalizers: Normalizers should store normalized data in proper base olle Request major net.sf.basedb.normalizers fixed
#551 Add 'install' target to normalizers build script Martin Svensson enhancement minor net.sf.basedb.normalizers fixed
#552 PluginUtilities-0.2.jar is in incorrect location Martin Svensson defect critical net.sf.basedb.normalizers fixed

Status: reopened (1 match)
Ticket Summary Owner Type Priority Component Resolution
#119 Create rank invariant normalizer Martin Svensson task major net.sf.basedb.normalizers
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