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Ticket Summary Status Type Priority Milestone Component
#267 Change qQuantilerNormalization underlying binary to use the new BFS format assigned task critical Normalization package v1.1 net.sf.basedb.normalizers
#43 Add request for proper default permissions (se.lu.thep.affymetrix). new enhancement major ZZ Other tickets se.lu.thep.affymetrix
#50 create a BASE2 plug-in for se.lu.thep.WeNNI assigned task major se.lu.thep.wenni 0.7 se.lu.thep.wenni
#70 Add releasing procedure to se.lu.thep.affymetrix new task major ZZ Other tickets se.lu.thep.affymetrix
#78 Spike Lowess (se.lu.onk.lowess) new task major ZZ Other tickets se.lu.onk series plug-ins
#80 QQPlot new task major ZZ Other tickets se.lu.onk series plug-ins
#81 Merge on genesymbol new task major ZZ Other tickets se.lu.onk series plug-ins
#82 COPA new task major ZZ Other tickets se.lu.onk series plug-ins
#85 Pinbased normalization for VirtualArray data new enhancement major ZZ Other tickets se.lu.onk series plug-ins
#86 BasicReporter and BasicSpot (se.lu.onk.BaseFile) new enhancement major ZZ Other tickets se.lu.onk series plug-ins
#87 AnnotationFilter (se.lu.onk.AnnotationFilter) new defect major ZZ Other tickets se.lu.onk series plug-ins
#96 Make the se.lu.thep.affymetrix plug-in compatible with the auto-installation wizard new enhancement major ZZ Other tickets se.lu.thep.affymetrix
#147 WeNNI for BASE2 should support the automatic plug-in installation feature of BASE new enhancement major se.lu.thep.wenni 0.7 se.lu.thep.wenni
#160 wenni and the underlying super class should be abortable (se.lu.thep.WeNNI) assigned enhancement major se.lu.thep.wenni 0.7 se.lu.thep.wenni
#169 Running two "New root bioassay set" jobs at the same time makes the second to finish crash new defect major ZZ Other tickets se.lu.thep.affymetrix
#172 Why is there a check for LIBTOOL in configure.ac in the WeNNI project? new task major se.lu.thep.wenni 0.7 se.lu.thep.wenni
#185 External binary plugins should be interruptable from BASE. assigned enhancement major ZZ Other tickets not classified
#188 Add IGV as an extension similarly to MEV new task major ZZ A wish list not classified
#209 Export of data to data repositories such as GEO and ArrayExpress new task major ZZ A wish list not classified
#210 net.sf.basedb.normalizers: Add proper 2-channel support to qQuantileNormalizer new defect major Normalization package v1.2 net.sf.basedb.normalizers
#225 qQuantiler should select all assays as reference by default assigned Request major Normalization package v1.1 net.sf.basedb.normalizers
#244 Create a SAM plug-in new Request major ZZ A wish list not classified
#250 Add GSEA as an extension new Request major ZZ A wish list not classified
#253 GeneSpring connector new Request major ZZ A wish list not classified
#254 Is Chipster something for BASE, should it be integrated similarly to MeV new Request major ZZ A wish list not classified
#256 Java web start enable data visualizer new Request major ZZ A wish list not classified
#260 Restructure tab2mage repository such that releases can be tagged new task major ZZ Other tickets not classified
#261 Create proper release packages of tab2mage plugins new task major ZZ Other tickets not classified
#262 Tab2Mage exporter exception: Can't use an unsaved item in query: Annotation set[new] new defect major ZZ Other tickets not classified
#268 Refactor qQuantileNormalizer plugin to use the ExternalProgramExecutor plugin assigned task major Normalization package v1.1 net.sf.basedb.normalizers
#306 Create package for supporting external files on Amazon S3 new Request major ZZ A wish list not classified
#463 Illumina expression background correction (version 1.7) does not ask for required permissions to write file new defect major Illumina package v1.8 net.sf.basedb.illumina
#531 BASE1 plugin - Transformation: Merge replicates new enhancement major ZZ Other tickets se.lu.onk series plug-ins
#588 Update extensions to target Java 1.7 and BASE 3.3 new task major not classified
#39 create reporter list (se.lu.onk.ztest) new enhancement minor ZZ Other tickets se.lu.onk series plug-ins
#56 rename component onk.lu.se to be se.lu.onk -- split into several packages new defect minor ZZ Other tickets se.lu.onk series plug-ins
#74 unmappable character for encoding UTF8 Copyright (C) Jari Häkkinen (se.lu.thep.affymetrix) new defect trivial ZZ Other tickets se.lu.thep.affymetrix
#158 README in PluginUtilities refers to AbstractRunBinary.jar assigned defect trivial ZZ Other tickets not classified
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