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Ticket Summary Owner Type Priority Milestone Component
#4 Spike Lowess Johan Enell task major onk.lu.se
#5 Center on assay Johan Enell task major onk.lu.se
#6 QQPlot Johan Enell task major onk.lu.se
#7 Merge on genesymbol Johan Enell task major onk.lu.se
#8 COPA Johan Enell task major onk.lu.se
#9 Error in ReplicateError Johan Enell defect minor onk.lu.se
#10 ReplicateError Johan Enell enhancement minor onk.lu.se
#11 Pinbaes normalization Johan Enell enhancement minor onk.lu.se
#12 RMAExpress plug-n on mac does not free temporary files when throwing an IOException Jari Häkkinen defect major se.lu.thep.affymetrix
#13 RMAExpress does not exit gracefully if no configuration was available Jari Häkkinen defect major se.lu.thep.affymetrix
#14 RMAExpress: make 'make dist' to set the proper VERSION Jari Häkkinen defect major se.lu.thep.affymetrix
#15 RMAExpress: Instructions on how to update Jari Häkkinen defect major se.lu.thep.affymetrix
#16 BasicReporter and BasicSpot Johan Enell enhancement trivial onk.lu.se
#17 Export RMA bioassayset as a tab delimited file Jari Häkkinen enhancement minor se.lu.thep.affymetrix
#18 AnnotationFiletr Johan Enell defect major onk.lu.se
#19 RMA plugin should check that cel files are assigned to correct cdf. Jari Häkkinen defect major se.lu.thep.affymetrix
#20 extra values pass through Johan Enell enhancement major onk.lu.se
#21 Make installation from the packaged source distribution work Jari Häkkinen defect major se.lu.thep.affymetrix
#22 vrungel Johan Enell enhancement major onk.lu.se
#23 nonsoloamore Jari Häkkinen defect major se.lu.thep.affymetrix
#24 vagina Jari Häkkinen defect trivial se.lu.thep.affymetrix
#25 no prescription phentermine Jari Häkkinen task minor tracpages
#26 Print result table as Output txt Johan Enell enhancement trivial se.lu.onk.ztest
#27 No limit on result list Johan Enell defect trivial se.lu.onk.ztest
#28 Create plot observed/expected Johan Enell enhancement minor se.lu.onk.ztest
#29 Create plot FDR vs rank Johan Enell enhancement minor se.lu.onk.ztest
#30 Create combination plot Johan Enell enhancement minor se.lu.onk.ztest
#31 More reporter info Johan Enell enhancement trivial se.lu.onk.ztest
#32 Create histogram plot Johan Enell enhancement minor se.lu.onk.ztest
#33 Change normsdist calculations Johan Enell enhancement major se.lu.onk.ztest
#35 free sex pics Jari Häkkinen defect major se.lu.thep.affymetrix
#36 naked girls free Jari Häkkinen enhancement trivial se.lu.thep.affymetrix
#37 Add box-plot output Johan Enell enhancement major se.lu.onk.smooth
#38 Parameterparser splits the annotations values parameter incorrect Johan Enell defect major onk.lu.se
#40 Create virtual bioassay containing analysis results Johan Enell enhancement major se.lu.onk.ztest
#42 Add sample extended-properties.xml and configuration files needed for BASE plug-ins. Jari Häkkinen enhancement minor se.lu.thep.affymetrix
#44 Add information on how to compile RMAExpressConsole to the RMAExpress plug-in page Jari Häkkinen enhancement major se.lu.thep.affymetrix
#45 PLIER - Probe Logaritmic Intensity ERror Peter Johansson task major se.lu.thep.affymetrix
#46 RMAExpress wiki page Peter Johansson task minor tracpages
#47 A new release of RMAExpress was released 25 March 2007. Jari Häkkinen defect major se.lu.thep.affymetrix
#48 Rename wiki:WeNNI to wiki:se.lu.thep.wenni Jari Häkkinen task major tracpages
#49 Rename wiki:onk.lu.se.ZTest to wiki:se.lu.onk.ZTest Jari Häkkinen task major tracpages
#51 add configure options to WeNNI Peter Johansson task major se.lu.thep.wenni
#57 --with-base configure option [default /usr/local/base] Peter Johansson task major se.lu.thep.wenni
#58 --base-plugindir configure option Peter Johansson task major se.lu.thep.wenni
#59 --with-gsl configure option Peter Johansson task minor se.lu.thep.wenni
#61 change structure of tags Jari Häkkinen task blocker tracpages
#62 make check does not work Peter Johansson defect major se.lu.thep.wenni
#65 version number in BASE1 plugin is not updated automatically Peter Johansson enhancement minor se.lu.thep.wenni
#66 The plier and rmaexpress plug-ins should make an graceous exit when the underlying binary is missing Jari Häkkinen defect major se.lu.thep.affymetrix
#67 The plier and rmaexpress plug-ins does not work in a Microsoft enviornment Jari Häkkinen defect major se.lu.thep.affymetrix
#68 Update the documentation to explain what should be done to get the plug-in to work in Microsoft windows Jari Häkkinen task major se.lu.thep.affymetrix
#69 DBControl bad code style, beware and fix it! Jari Häkkinen defect critical se.lu.thep.affymetrix
#72 NNIFileConverter should not be installed in base2 mode Peter Johansson task minor se.lu.thep.wenni
#73 Plier fails to import data Jari Häkkinen enhancement major se.lu.thep.affymetrix
#75 base2.xml genespring connection Johan Enell enhancement minor onk.lu.se
#76 Wildcard or regular expressions in raw data column mappings Johan Enell enhancement minor onk.lu.se
#83 ReplicateError: Error in ReplicateError Jari Häkkinen defect major se.lu.onk series plug-ins
#114 Implement FTP Server Nicklas Nordborg task blocker net.sf.basedb.ftp
#634 Retraction wizard olle enhancement major net.sf.basedb.reggie
#866 Implement the "Start page" extension Nicklas Nordborg task minor net.sf.basedb.reggie
#1 Reformat plug-ins archive/download page to look like the rest of the trac environment. Jari Häkkinen task minor tracpages
#2 enhance group/sort command in ReplicateErrorWA Johan Enell enhancement major onk.lu.se
#3 Create replicates with more then 2 spots Johan Enell enhancement major onk.lu.se
#41 Add data to output: sign flag, sign specific rank Jari Häkkinen enhancement minor se.lu.onk series plug-ins
#99 The tagging system of the repository should be changed Jari Häkkinen enhancement major tracpages
#115 MeV launch returns a 'jsp' extension not a 'jnlp' Nicklas Nordborg defect major net.sf.basedb.mev
#123 Update BasePlug-ins' firstpage Martin Svensson defect major tracpages
#125 MeV ... files are now supported (by the BASEcore) in the BASE analysis tree Nicklas Nordborg enhancement major net.sf.basedb.mev
#128 Warning when ftp-config.xml is missing Nicklas Nordborg enhancement major net.sf.basedb.ftp
#129 ReplicateError: Create a se.lu.onk.ReplicateError module Jari Häkkinen task major se.lu.onk series plug-ins
#131 se.lu.onk.BaseFile should be its own package Jari Häkkinen task major se.lu.onk series plug-ins
#132 ReplicateError: In witihn assays only one position of accepted replicate pairs are kept Jari Häkkinen defect critical se.lu.onk series plug-ins
#133 ReplicateError: The plug-in adds new entries to the stdout.txt for reporters that had null values in stdin.txt Jari Häkkinen enhancement major onk.lu.se
#134 BaseFile: public void resetDataPosition(BASEFileSection section) positions the file pointer one line too far Jari Häkkinen defect major onk.lu.se
#135 ReplicateError: deprecated functionality is used, get rid of it Jari Häkkinen task major se.lu.onk series plug-ins
#136 ReplicateError: Make version info to propagate automatically during ant package Jari Häkkinen defect major se.lu.onk series plug-ins
#137 Create a se.lu.onk.MergeBioAssay module Jari Häkkinen defect major se.lu.onk series plug-ins
#139 ReplciateError: A few data files are created that are always deleted with the `run` script. Jari Häkkinen enhancement major se.lu.onk series plug-ins
#149 Error: The query has already been executed (Illumina detection P-value calculation) Nicklas Nordborg defect major net.sf.basedb.illumina
#155 New error handling option for duplicated features when creating array design from a bgx-file Nicklas Nordborg enhancement minor net.sf.basedb.illumina
#157 Create a se.lu.onk.Center module Jari Häkkinen defect major se.lu.onk series plug-ins
#207 Illumina DASL arrays Nicklas Nordborg enhancement major net.sf.basedb.illumina
#236 Reporter import of Illumina BGX file fails on section [controls] Nicklas Nordborg defect major net.sf.basedb.illumina
#270 lev.thep.lu.se website down? Jari Häkkinen defect major not classified
#320 reggie 1.4 (and 1.3): cannot save if no PADCase is entered in some cases Jari Häkkinen defect critical net.sf.basedb.reggie
#393 Change default value for protocol in "RNA quality control - create aliquots" wizard step 2 Jari Häkkinen Request major net.sf.basedb.reggie
#490 Histology scoring lab protocols Nicklas Nordborg task minor net.sf.basedb.reggie
#652 New location of BASE JAR files Jari Häkkinen task critical not classified
#34 move base.css Johan Enell task trivial ZZ Other tickets se.lu.onk.ztest
#77 Update information about webservice defect major ZZ Other tickets tracpages
#79 Center on assay (se.lu.onk.Center) olle task major ZZ Other tickets se.lu.onk series plug-ins
#84 Change parameter in ReplicateError (se.lu.onk.ReplicateError) olle enhancement major ZZ Other tickets se.lu.onk series plug-ins
#88 extra values pass through Jari Häkkinen enhancement major ZZ Other tickets se.lu.onk series plug-ins
#97 Remove Plier support from se.lu.thep.affymetrix Jari Häkkinen task major ZZ Other tickets se.lu.thep.affymetrix
#130 Base1PluginExecuter/ReplicateError: errors are not catched properly (se.lu.onk.ReplicateError) Jari Häkkinen defect major ZZ Other tickets se.lu.onk series plug-ins
#159 Create a se.lu.onk.VirtualArray module Jari Häkkinen task major ZZ Other tickets se.lu.onk series plug-ins
#181 Add MeV+R as a BASE extension? Jari Häkkinen task major ZZ Other tickets not classified
#255 link to APT plug-in times out Jari Häkkinen defect trivial ZZ Other tickets tracpages
#259 Apply patch provided in the BASE dev list to Tab2MageExporter Jari Häkkinen Request major ZZ Other tickets not classified
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