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Ticket Summary Owner Type Priority Milestone Component
#1 Reformat plug-ins archive/download page to look like the rest of the trac environment. Jari Häkkinen task minor tracpages
#2 enhance group/sort command in ReplicateErrorWA Johan Enell enhancement major onk.lu.se
#3 Create replicates with more then 2 spots Johan Enell enhancement major onk.lu.se
#4 Spike Lowess Johan Enell task major onk.lu.se
#5 Center on assay Johan Enell task major onk.lu.se
#6 QQPlot Johan Enell task major onk.lu.se
#7 Merge on genesymbol Johan Enell task major onk.lu.se
#8 COPA Johan Enell task major onk.lu.se
#9 Error in ReplicateError Johan Enell defect minor onk.lu.se
#10 ReplicateError Johan Enell enhancement minor onk.lu.se
#11 Pinbaes normalization Johan Enell enhancement minor onk.lu.se
#12 RMAExpress plug-n on mac does not free temporary files when throwing an IOException Jari Häkkinen defect major se.lu.thep.affymetrix
#13 RMAExpress does not exit gracefully if no configuration was available Jari Häkkinen defect major se.lu.thep.affymetrix
#14 RMAExpress: make 'make dist' to set the proper VERSION Jari Häkkinen defect major se.lu.thep.affymetrix
#15 RMAExpress: Instructions on how to update Jari Häkkinen defect major se.lu.thep.affymetrix
#16 BasicReporter and BasicSpot Johan Enell enhancement trivial onk.lu.se
#17 Export RMA bioassayset as a tab delimited file Jari Häkkinen enhancement minor se.lu.thep.affymetrix
#18 AnnotationFiletr Johan Enell defect major onk.lu.se
#19 RMA plugin should check that cel files are assigned to correct cdf. Jari Häkkinen defect major se.lu.thep.affymetrix
#20 extra values pass through Johan Enell enhancement major onk.lu.se
#21 Make installation from the packaged source distribution work Jari Häkkinen defect major se.lu.thep.affymetrix
#22 vrungel Johan Enell enhancement major onk.lu.se
#23 nonsoloamore Jari Häkkinen defect major se.lu.thep.affymetrix
#24 vagina Jari Häkkinen defect trivial se.lu.thep.affymetrix
#25 no prescription phentermine Jari Häkkinen task minor tracpages
#26 Print result table as Output txt Johan Enell enhancement trivial se.lu.onk.ztest
#27 No limit on result list Johan Enell defect trivial se.lu.onk.ztest
#28 Create plot observed/expected Johan Enell enhancement minor se.lu.onk.ztest
#29 Create plot FDR vs rank Johan Enell enhancement minor se.lu.onk.ztest
#30 Create combination plot Johan Enell enhancement minor se.lu.onk.ztest
#31 More reporter info Johan Enell enhancement trivial se.lu.onk.ztest
#32 Create histogram plot Johan Enell enhancement minor se.lu.onk.ztest
#33 Change normsdist calculations Johan Enell enhancement major se.lu.onk.ztest
#34 move base.css Johan Enell task trivial ZZ Other tickets se.lu.onk.ztest
#35 free sex pics Jari Häkkinen defect major se.lu.thep.affymetrix
#36 naked girls free Jari Häkkinen enhancement trivial se.lu.thep.affymetrix
#37 Add box-plot output Johan Enell enhancement major se.lu.onk.smooth
#38 Parameterparser splits the annotations values parameter incorrect Johan Enell defect major onk.lu.se
#40 Create virtual bioassay containing analysis results Johan Enell enhancement major se.lu.onk.ztest
#41 Add data to output: sign flag, sign specific rank Jari Häkkinen enhancement minor se.lu.onk series plug-ins
#42 Add sample extended-properties.xml and configuration files needed for BASE plug-ins. Jari Häkkinen enhancement minor se.lu.thep.affymetrix
#44 Add information on how to compile RMAExpressConsole to the RMAExpress plug-in page Jari Häkkinen enhancement major se.lu.thep.affymetrix
#45 PLIER - Probe Logaritmic Intensity ERror Peter Johansson task major se.lu.thep.affymetrix
#46 RMAExpress wiki page Peter Johansson task minor tracpages
#47 A new release of RMAExpress was released 25 March 2007. Jari Häkkinen defect major se.lu.thep.affymetrix
#48 Rename wiki:WeNNI to wiki:se.lu.thep.wenni Jari Häkkinen task major tracpages
#49 Rename wiki:onk.lu.se.ZTest to wiki:se.lu.onk.ZTest Jari Häkkinen task major tracpages
#51 add configure options to WeNNI Peter Johansson task major se.lu.thep.wenni
#52 Add educational material and use cases. Jari Häkkinen task trivial se.lu.thep.wenni 0.7 se.lu.thep.wenni
#53 update INSTALL Jari Häkkinen task major se.lu.thep.wenni 0.7 se.lu.thep.wenni
#54 update README Jari Häkkinen task major se.lu.thep.wenni 0.7 se.lu.thep.wenni
#55 update ChangeLog Jari Häkkinen task major se.lu.thep.wenni 0.7 se.lu.thep.wenni
#57 --with-base configure option [default /usr/local/base] Peter Johansson task major se.lu.thep.wenni
#58 --base-plugindir configure option Peter Johansson task major se.lu.thep.wenni
#59 --with-gsl configure option Peter Johansson task minor se.lu.thep.wenni
#60 explain how to run wenni (base1 version) against a base_devkit Peter Johansson task major se.lu.thep.wenni 0.7 se.lu.thep.wenni
#61 change structure of tags Jari Häkkinen task blocker tracpages
#62 make check does not work Peter Johansson defect major se.lu.thep.wenni
#63 make distcheck should work Jari Häkkinen enhancement major se.lu.thep.wenni 0.7 se.lu.thep.wenni
#64 configure does not find basefile.h Jari Häkkinen defect minor se.lu.thep.wenni 0.7 se.lu.thep.wenni
#65 version number in BASE1 plugin is not updated automatically Peter Johansson enhancement minor se.lu.thep.wenni
#66 The plier and rmaexpress plug-ins should make an graceous exit when the underlying binary is missing Jari Häkkinen defect major se.lu.thep.affymetrix
#67 The plier and rmaexpress plug-ins does not work in a Microsoft enviornment Jari Häkkinen defect major se.lu.thep.affymetrix
#68 Update the documentation to explain what should be done to get the plug-in to work in Microsoft windows Jari Häkkinen task major se.lu.thep.affymetrix
#69 DBControl bad code style, beware and fix it! Jari Häkkinen defect critical se.lu.thep.affymetrix
#72 NNIFileConverter should not be installed in base2 mode Peter Johansson task minor se.lu.thep.wenni
#73 Plier fails to import data Jari Häkkinen enhancement major se.lu.thep.affymetrix
#75 base2.xml genespring connection Johan Enell enhancement minor onk.lu.se
#76 Wildcard or regular expressions in raw data column mappings Johan Enell enhancement minor onk.lu.se
#77 Update information about webservice defect major ZZ Other tickets tracpages
#79 Center on assay (se.lu.onk.Center) olle task major ZZ Other tickets se.lu.onk series plug-ins
#83 ReplicateError: Error in ReplicateError Jari Häkkinen defect major se.lu.onk series plug-ins
#84 Change parameter in ReplicateError (se.lu.onk.ReplicateError) olle enhancement major ZZ Other tickets se.lu.onk series plug-ins
#88 extra values pass through Jari Häkkinen enhancement major ZZ Other tickets se.lu.onk series plug-ins
#89 Installation program and documentation Johan Enell task critical Illumina package v1.0 net.sf.basedb.illumina
#90 Create array design from a bgx-file Martin Svensson task critical Illumina package v1.0 net.sf.basedb.illumina
#91 Import Illumina Bead Summary(IBS) files as raw data Nicklas Nordborg task major Illumina package v1.0 net.sf.basedb.illumina
#92 Create Illumina SNP raw data type Johan Enell defect critical Illumina package v1.0 net.sf.basedb.illumina
#93 Illumina SNP validator and meta-data extractor Martin Svensson task critical Illumina package v1.0 net.sf.basedb.illumina
#94 Import reporter annotations from bgx files Nicklas Nordborg task major Illumina package v1.0 net.sf.basedb.illumina
#95 Intensity calculator for Illumina expression data Jari Häkkinen task major Illumina package v1.1 net.sf.basedb.illumina
#97 Remove Plier support from se.lu.thep.affymetrix Jari Häkkinen task major ZZ Other tickets se.lu.thep.affymetrix
#98 Implement validator and metadata extractor plug-in for BGX files Martin Svensson task major Illumina package v1.0 net.sf.basedb.illumina
#99 The tagging system of the repository should be changed Jari Häkkinen enhancement major tracpages
#100 Add Illumina SNP platform to the installation program Martin Svensson enhancement critical Illumina package v1.0 net.sf.basedb.illumina
#101 Import plug-in for SNP raw data Martin Svensson task critical Illumina package v1.0 net.sf.basedb.illumina
#102 Intensity calculator for Illumina SNP data Nicklas Nordborg task major Illumina package v1.0 net.sf.basedb.illumina
#103 Create example extensions Nicklas Nordborg task blocker Extension examples v1.0 net.sf.basedb.examples.extensions
#104 Add information that BASE2WSClient.jar is needed to compile the plug-ins Jari Häkkinen defect major Illumina package v1.1 net.sf.basedb.illumina
#105 Complete the move of the example code from BASE. Nicklas Nordborg task blocker Plugin examples v2.6 net.sf.basedb.examples.plugins
#106 Move the example web services code from the BASE server Nicklas Nordborg task major Web services examples v2.6 net.sf.basedb.examples.webservices
#107 Move the MEV specific code from BASE Nicklas Nordborg task blocker MEV Launcher v1.0 net.sf.basedb.mev
#108 Update information about MEV on the BASE-hacks site Nicklas Nordborg task major MEV Launcher v1.0 net.sf.basedb.mev
#109 Add information to the wiki page on how to give feedback on the Illumina package Nicklas Nordborg task major Illumina package v1.1 net.sf.basedb.illumina
#110 Illumina detection P-value plug-in Jari Häkkinen enhancement major Illumina package v1.1 net.sf.basedb.illumina
#111 Update Illumina wiki pages and related documentation before release Jari Häkkinen task major Illumina package v1.1 net.sf.basedb.illumina
#112 Illumina plug-in installer script fails (in some cases) Martin Svensson defect major Illumina package v1.2 net.sf.basedb.illumina
#113 Add support for more variations of Illumina detection P-value calculations Jari Häkkinen enhancement major Illumina package v1.4 net.sf.basedb.illumina
#114 Implement FTP Server Nicklas Nordborg task blocker net.sf.basedb.ftp
#115 MeV launch returns a 'jsp' extension not a 'jnlp' Nicklas Nordborg defect major net.sf.basedb.mev
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