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Ticket Summary Owner Type Priority Milestone Component
#300 Allow non-standard personal numbers Nicklas Nordborg enhancement major Reggie v1.1 net.sf.basedb.reggie
#302 Update functionality in the Personal information registration Nicklas Nordborg enhancement major Reggie v1.2 net.sf.basedb.reggie
#303 Automatic attachment of files to sample (Case) items Nicklas Nordborg Request major Reggie v1.2 net.sf.basedb.reggie
#199 Change source files to UTF-8 Nicklas Nordborg task minor Plugin examples v2.x net.sf.basedb.examples.plugins
#287 Change "source" and "target" compilation options to 1.6 Nicklas Nordborg defect major Plugin examples v2.x net.sf.basedb.examples.plugins
#289 Add 'download-lib' target to ant buildfile and remove checked in BASE jar file Nicklas Nordborg enhancement minor Plugin examples v2.x net.sf.basedb.examples.plugins
#307 Consent form registration Nicklas Nordborg task major Reggie v1.3 net.sf.basedb.reggie
#308 Move common style definitions and javascript functions to separate files Nicklas Nordborg task major Reggie v1.3 net.sf.basedb.reggie
#293 Remove workaround for for BASE ticket 1583 when 2.17.1 has been released Martin Svensson enhancement major Reggie v1.4 net.sf.basedb.reggie
#294 Require BASE 2.17.1 Martin Svensson task major Reggie v1.4 net.sf.basedb.reggie
#316 Add support for 'YYYYMMDD' date format in the 'Consent form registration wizard' Martin Svensson enhancement major Reggie v1.4 net.sf.basedb.reggie
#318 Remove references to lib copying in reggie README Martin Svensson defect major Reggie v1.5 net.sf.basedb.reggie
#319 Remove lib/reggie from trunk Martin Svensson defect major Reggie v1.5 net.sf.basedb.reggie
#321 reggie 1.4: Consentform cannot be registered if date is missing Jari Häkkinen defect major Reggie v1.5 net.sf.basedb.reggie
#322 Select multiple "not asked" sub-options Nicklas Nordborg Request major Reggie v1.5 net.sf.basedb.reggie
#323 Cannot save "Personal information registration" form if no "Sampling date" or "RNA Later date" is entered Nicklas Nordborg defect major Reggie v1.5 net.sf.basedb.reggie
#324 Problem registering a case for specimen tubes with children Nicklas Nordborg defect major Reggie v1.5 net.sf.basedb.reggie
#281 Plug-in should suggest better job names Nicklas Nordborg enhancement major Example code v1.3 net.sf.basedb.examples.plugins
#282 Add example of an edit-dialog extension Nicklas Nordborg task major Example code v1.3 net.sf.basedb.examples.extensions
#283 Change "source" and "target" compilation options to 1.6 Nicklas Nordborg defect minor Example code v1.3 net.sf.basedb.examples.extensions
#309 Merge example plug-ins and extensions into one package Nicklas Nordborg task major Example code v1.3 net.sf.basedb.examples.extensions
#310 Update extension examples to BASE 3 Nicklas Nordborg task major Example code v1.3 net.sf.basedb.examples.extensions
#314 Switch to GPL3 Nicklas Nordborg task blocker Example code v1.3 net.sf.basedb.examples.extensions
#200 Change source files to UTF-8 Nicklas Nordborg task minor Web services examples v3.0 net.sf.basedb.examples.webservices
#288 Change "source" and "target" compilation options to 1.6 Nicklas Nordborg defect minor Web services examples v3.0 net.sf.basedb.examples.webservices
#290 Add 'download-lib' target to ant buildfile and remove checked in BASE jar file Nicklas Nordborg enhancement minor Web services examples v3.0 net.sf.basedb.examples.webservices
#327 Update web service examples to BASE 3 Nicklas Nordborg task major Web services examples v3.0 net.sf.basedb.examples.webservices
#284 Change "source" and "target" compilation options to 1.6 Nicklas Nordborg defect minor FTP Server v1.2 net.sf.basedb.ftp
#313 Updates required for BASE 3 support Martin Svensson task major FTP Server v1.2 net.sf.basedb.ftp
#315 Switch to GPL3 Martin Svensson task blocker FTP Server v1.2 net.sf.basedb.ftp
#329 Set active project when using FTP Nicklas Nordborg task major FTP Server v1.2 net.sf.basedb.ftp
#332 Update to FTP server lib 1.0.6 Nicklas Nordborg task major FTP Server v1.2 net.sf.basedb.ftp
#279 Plug-in should suggest better job names Nicklas Nordborg enhancement major MeV Launcher v1.8 net.sf.basedb.mev
#286 Change "source" and "target" compilation options to 1.6 Nicklas Nordborg defect minor MeV Launcher v1.8 net.sf.basedb.mev
#312 Updates required for BASE 3 support Martin Svensson task major MeV Launcher v1.8 net.sf.basedb.mev
#328 Switch to GPL3 Nicklas Nordborg task major MeV Launcher v1.8 net.sf.basedb.mev
#333 Update to MeV 4.7 Nicklas Nordborg task major MeV Launcher v1.8 net.sf.basedb.mev
#278 Plug-in should suggest better job names Nicklas Nordborg enhancement major Illumina package v1.7 net.sf.basedb.illumina
#285 Change "source" and "target" compilation options to 1.6 Nicklas Nordborg defect minor Illumina package v1.7 net.sf.basedb.illumina
#311 Updates required for BASE 3 support Nicklas Nordborg task blocker Illumina package v1.7 net.sf.basedb.illumina
#304 Implement HDFS external file support Nicklas Nordborg task major HDFS package v1.0 net.sf.basedb.hdfs
#317 Specimen tube registration wizard Martin Svensson task major Reggie v1.6 net.sf.basedb.reggie
#330 Partition registration wizard Martin Svensson enhancement major Reggie v1.6 net.sf.basedb.reggie
#326 Updates required for BASE 3 support Nicklas Nordborg Request blocker Reggie v2.0 net.sf.basedb.reggie
#335 Use item subtypes - step 1 Nicklas Nordborg task critical Reggie v2.0 net.sf.basedb.reggie
#336 Add bioplate test data Nicklas Nordborg task major Reggie v2.0 net.sf.basedb.reggie
#342 reggie partition manager should not list deleted specimen tubes in 'Select specimen tubes' dialouge Nicklas Nordborg enhancement major Reggie v2.0.1 net.sf.basedb.reggie
#343 Partion wizard try to create a histology sample with itself as parent Nicklas Nordborg defect blocker Reggie v2.0.1 net.sf.basedb.reggie
#344 Exception when trying to register more than one specimen tube for a case Nicklas Nordborg defect major Reggie v2.0.2 net.sf.basedb.reggie
#334 Use item subtypes - step 2 Nicklas Nordborg task major Reggie v2.1 net.sf.basedb.reggie
#337 Specimen tube wizard: Automatically restart Martin Svensson enhancement major Reggie v2.1 net.sf.basedb.reggie
#339 New entry: Report generator Martin Svensson enhancement major Reggie v2.1 net.sf.basedb.reggie
#340 Set subtype for all biomaterial items Jari Häkkinen task blocker Reggie v2.1 net.sf.basedb.reggie
#341 Specimen tube registration wizard should check name format Martin Svensson enhancement major Reggie v2.1 net.sf.basedb.reggie
#345 Add header line to csv file that can be downloaded from the partition wizard Nicklas Nordborg enhancement major Reggie v2.1 net.sf.basedb.reggie
#346 Create virtual patient for cases with consent=no or not asked Nicklas Nordborg enhancement major Reggie v2.1 net.sf.basedb.reggie
#347 Exception when trying to register more than one specimen tube for a case Nicklas Nordborg defect major Reggie v2.1 net.sf.basedb.reggie
#348 Consent form registration wizard should allow 'Yes' in all cases Nicklas Nordborg enhancement critical Reggie v2.2 net.sf.basedb.reggie
#349 Copy consent information to multiple cases Nicklas Nordborg enhancement critical Reggie v2.2 net.sf.basedb.reggie
#350 Blood referral form registration wizard Nicklas Nordborg task critical Reggie v2.2 net.sf.basedb.reggie
#351 Check case name in all wizards Nicklas Nordborg enhancement minor Reggie v2.2 net.sf.basedb.reggie
#352 'Consent date' annotation is not added to the 'Case' annotation type category Nicklas Nordborg defect trivial Reggie v2.2 net.sf.basedb.reggie
#353 The No and Not asked biosources should have their own Types Nicklas Nordborg Request major Reggie v2.2 net.sf.basedb.reggie
#355 Partition wizard should use local storage to save form Nicklas Nordborg enhancement major Reggie v2.3 net.sf.basedb.reggie
#356 Warning message about non-standard personal number is not shown when <enter> is used Nicklas Nordborg defect minor Reggie v2.3 net.sf.basedb.reggie
#357 Some barcoded personal numbers is using 2-digit years instead of 4 Nicklas Nordborg enhancement major Reggie v2.3 net.sf.basedb.reggie
#358 Consent registration always create virtual patients 'No000001' and 'Not asked000001' Nicklas Nordborg defect major Reggie v2.3 net.sf.basedb.reggie
#359 Changes related to new GUI in BASE 3.1 Nicklas Nordborg enhancement minor Example code v1.4 net.sf.basedb.examplecode
#360 Changes related to new GUI in BASE 3.1 Nicklas Nordborg enhancement major MeV Launcher v1.9 net.sf.basedb.mev
#361 MeV TDMS exporter should only include reporter fields that are present in the experiment Nicklas Nordborg task blocker MeV Launcher v1.9 net.sf.basedb.mev
#362 Add 'install' target to ant build script Nicklas Nordborg task major MeV Launcher v1.9 net.sf.basedb.mev
#338 Update Ajax2 to 1.6.1 Nicklas Nordborg task major Web services examples v3.1 net.sf.basedb.examples.webservices
#354 Changes related to new GUI in BASE 3.1 Nicklas Nordborg enhancement major Reggie v2.4 net.sf.basedb.reggie
#364 Put RNA aliquots on bioplate to be used by the Caliper machine Nicklas Nordborg task critical Reggie v2.4 net.sf.basedb.reggie
#365 Export bioplate information to a file that can be used by the Caliper machine Nicklas Nordborg task critical Reggie v2.4 net.sf.basedb.reggie
#366 Import annotations and other information from Caliper output Nicklas Nordborg task major Reggie v2.4 net.sf.basedb.reggie
#367 Incorrect mapping of prefix index to site name Nicklas Nordborg defect major Reggie v2.4 net.sf.basedb.reggie
#368 Clearing the PAD field in the registration wizard should clear the PAD on specimen Nicklas Nordborg enhancement major Reggie v2.4 net.sf.basedb.reggie
#369 Update names for an existing patient Nicklas Nordborg enhancement major Reggie v2.4 net.sf.basedb.reggie
#370 Export run parameters to Caliper XML file Nicklas Nordborg task critical Reggie v2.4 net.sf.basedb.reggie
#374 Store operation date on case items Nicklas Nordborg enhancement major Reggie v2.4 net.sf.basedb.reggie
#375 Personal registration wizard should set creation date on specimen tubes Nicklas Nordborg defect major Reggie v2.4 net.sf.basedb.reggie
#378 Consent registration wizard should display consent date if it is already registered Nicklas Nordborg defect minor Reggie v2.4 net.sf.basedb.reggie
#379 Create "virtual" samples for cases when no specimen is received Nicklas Nordborg task critical Reggie v2.5 net.sf.basedb.reggie
#380 Refactor annotation type handling in Reggie Nicklas Nordborg enhancement major Reggie v2.5 net.sf.basedb.reggie
#381 Handle core biopsies Nicklas Nordborg task critical Reggie v2.5 net.sf.basedb.reggie
#382 Remove the referral form registration wizard Nicklas Nordborg task minor Reggie v2.5 net.sf.basedb.reggie
#383 Remove BASE 3.0 CSS support Nicklas Nordborg task minor Reggie v2.5 net.sf.basedb.reggie
#384 RNAQC subtype should set the 'Push annotations to parent' option Nicklas Nordborg enhancement minor Reggie v2.5 net.sf.basedb.reggie
#385 Export information needed by the tumor registry Nicklas Nordborg task major Reggie v2.6 net.sf.basedb.reggie
#386 Qiacube/nanodrop wizard Nicklas Nordborg task critical Reggie v2.6 net.sf.basedb.reggie
#387 The ROOT user doesn't have permission to use several reggie wizards Nicklas Nordborg defect minor Reggie v2.6 net.sf.basedb.reggie
#388 Lysate/Qiacube/NanoDrop lab tracking protocol Nicklas Nordborg task critical Reggie v2.6 net.sf.basedb.reggie
#389 The partition wizard should not allow missing weights in some cases Nicklas Nordborg enhancement major Reggie v2.6 net.sf.basedb.reggie
#390 Search for subtype and annotation type among proper main item type Nicklas Nordborg defect major Reggie v2.6 net.sf.basedb.reggie
#391 The 'Sample report' wizard should use the new Site information Nicklas Nordborg enhancement minor Reggie v2.6 net.sf.basedb.reggie
#392 Redesign reggie wizards that result in long pages Nicklas Nordborg enhancement minor Reggie v2.6 net.sf.basedb.reggie
#403 NullPointerException when using the TDMS exporter Nicklas Nordborg defect major MeV Launcher 1.10 net.sf.basedb.mev
#405 Update certificate used for signing the web start files Nicklas Nordborg task minor MeV Launcher 1.10 net.sf.basedb.mev
#406 Update to MeV 4.8 Nicklas Nordborg task major MeV Launcher 1.10 net.sf.basedb.mev
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