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Ticket Summary Owner Type Priority Milestone Component
#371 Wizard that move histology samples to paraffin blocks Nicklas Nordborg task critical Reggie v2.7 net.sf.basedb.reggie
#372 Generate lab protocol for FFPE Nicklas Nordborg task major Reggie v2.7 net.sf.basedb.reggie
#373 Register HE glass and histology child items Nicklas Nordborg task major Reggie v2.7 net.sf.basedb.reggie
#394 Change weight table order in Partition wizard Jari Häkkinen Request major Reggie v2.7 not classified
#395 Add 'laterality' column to the montly operation list export Nicklas Nordborg enhancement major Reggie v2.7 net.sf.basedb.reggie
#396 Use tab instead of comma as column separator for the monthly operation list export Nicklas Nordborg enhancement major Reggie v2.7 net.sf.basedb.reggie
#397 Add option to export item subtype in the monthly operation list Nicklas Nordborg enhancement major Reggie v2.7 net.sf.basedb.reggie
#398 Add option to export the monthly operation list for a full year Nicklas Nordborg enhancement major Reggie v2.7 net.sf.basedb.reggie
#399 Registration wizard should store laterality on NoSpecimen items Nicklas Nordborg enhancement major Reggie v2.7 net.sf.basedb.reggie
#400 Update NoSpecimen items with values for laterality Jari Häkkinen task major Reggie v2.7 net.sf.basedb.reggie
#401 Add 'case' column to the montly operation list export Nicklas Nordborg enhancement major Reggie v2.7 net.sf.basedb.reggie
#402 Default protocol selection Nicklas Nordborg enhancement major Reggie v2.7 net.sf.basedb.reggie
#404 Record if more than one piece has been used for Allprep Nicklas Nordborg task major Reggie v2.7 net.sf.basedb.reggie
#407 Cannot import Caliper result if a QCRunDate is given Nicklas Nordborg defect critical Reggie v2.7 net.sf.basedb.reggie
#408 Caliper importer should import NA values as -100 Nicklas Nordborg enhancement major Reggie v2.7 net.sf.basedb.reggie
#409 The sample count report generator doesn't filter on current project Nicklas Nordborg defect minor Reggie v2.7 net.sf.basedb.reggie
#412 Qiacube/nanodrop wizard should have default RNA volume=51µl Nicklas Nordborg enhancement minor Reggie v2.7 net.sf.basedb.reggie
#376 Create some example extensions that add list columns Nicklas Nordborg task major Example code v1.5 net.sf.basedb.examplecode
#377 Create some example extensions for the item overview Nicklas Nordborg task major Example code v1.5 net.sf.basedb.examplecode
#410 Create an example extensions for logging Nicklas Nordborg task major Example code v1.5 net.sf.basedb.examplecode
#411 Enable core biopsy 'C' suffix for more sites Nicklas Nordborg enhancement critical Reggie v2.8 net.sf.basedb.reggie
#414 The NanoDrop import wizard doesn't accept '0' values Nicklas Nordborg defect major Reggie v2.8 net.sf.basedb.reggie
#415 Accept small 'c' in case barcode Nicklas Nordborg defect minor Reggie v2.8 net.sf.basedb.reggie
#416 Check consent before exporting "monthly operation list" Nicklas Nordborg enhancement major Reggie v2.8 net.sf.basedb.reggie
#417 Enable core biopsy 'C' suffix for all sites Nicklas Nordborg enhancement major Reggie v2.9 net.sf.basedb.reggie
#418 Dates are not parsed correctly by the sample report generator Nicklas Nordborg defect critical Reggie v2.9 net.sf.basedb.reggie
#419 Allow user to select resolution in sample count report olle enhancement major Reggie v2.9 net.sf.basedb.reggie
#420 Sample count report should have two columns for summed data olle enhancement major Reggie v2.9 net.sf.basedb.reggie
#421 Sample count report does not always handle all views correctly olle defect major Reggie v2.9 net.sf.basedb.reggie
#426 Consent count report generator olle enhancement major Reggie v2.9 net.sf.basedb.reggie
#428 Reports should have sites in alphabetic order and a column with latest item dates olle enhancement major Reggie v2.9 net.sf.basedb.reggie
#429 Blood samples should store sampling date as creation date Nicklas Nordborg defect major Reggie v2.9 net.sf.basedb.reggie
#430 Consent count report should allow time period selection olle enhancement major Reggie v2.9 net.sf.basedb.reggie
#431 Add option for exporting PAT-id in the montly operation list Nicklas Nordborg enhancement major Reggie v2.9 net.sf.basedb.reggie
#432 The monthly operation list should include column headers Nicklas Nordborg enhancement minor Reggie v2.9 net.sf.basedb.reggie
#433 Patient count report generator olle enhancement major Reggie v2.9 net.sf.basedb.reggie
#434 Sample count report should allow selection of specimen or blood sample olle enhancement major Reggie v2.9 net.sf.basedb.reggie
#435 Depend on BASE 3.2 Nicklas Nordborg enhancement major Reggie v2.10 net.sf.basedb.reggie
#437 Rules for comparing 'sampling date' and 'RNA later' date should be the same Nicklas Nordborg defect major Reggie v2.10 net.sf.basedb.reggie
#438 Overview report olle enhancement major Reggie v2.10 net.sf.basedb.reggie
#439 Missing sample data report olle enhancement major Reggie v2.10 net.sf.basedb.reggie
#442 Allow pathology and blood registration wizards to save patients without names Nicklas Nordborg enhancement minor Reggie v2.10 net.sf.basedb.reggie
#443 Sample count report should allow selection of "no specimen" items olle enhancement major Reggie v2.10 net.sf.basedb.reggie
#444 The 'Plasma/serum' checkbox should be checked by default in the blood registration wizard olle enhancement minor Reggie v2.10 net.sf.basedb.reggie
#445 The HE glass registration wizard should have comment fields Nicklas Nordborg enhancement major Reggie v2.10 net.sf.basedb.reggie
#446 The Paraffin block registration wizard should have comment fields Nicklas Nordborg enhancement major Reggie v2.10 net.sf.basedb.reggie
#447 The HE glass registration wizard should have a field for the number of slides Nicklas Nordborg enhancement major Reggie v2.10 net.sf.basedb.reggie
#448 Register comments for blood samples olle enhancement minor Reggie v2.10 net.sf.basedb.reggie
#451 Change 'storage location' for paraffin blocks and HE glass Nicklas Nordborg enhancement critical Reggie v2.10 net.sf.basedb.reggie
#452 Consent count report should not count missing constents as consents with unknown date olle enhancement major Reggie v2.10.1 net.sf.basedb.reggie
#453 Incorrect registration of case if consent form is registered before blood referral form and no pathology referral form exists Nicklas Nordborg defect major Reggie v2.10.2 net.sf.basedb.reggie
#450 Show information about a case/patient Nicklas Nordborg task major Reggie v2.11 net.sf.basedb.reggie
#454 NanoDrop import wizard fails to import files with multiple measurements of the same sample in some cases Nicklas Nordborg defect major Reggie v2.11 net.sf.basedb.reggie
#458 Sample count report should be refactored to use week codes with leading 0 olle enhancement minor Reggie v2.11 net.sf.basedb.reggie
#459 Common table report utilities should be placed in its own class olle enhancement major Reggie v2.11 net.sf.basedb.reggie
#461 Sample processing report generator olle enhancement major Reggie v2.11 net.sf.basedb.reggie
#462 Implement a print function that can print complete pages Nicklas Nordborg task critical Reggie v2.11 net.sf.basedb.reggie
#464 Implement a 'Print' button for table listings Nicklas Nordborg task major Print package v1.0 net.sf.basedb.print
#465 Improve printing of canvas elements Nicklas Nordborg enhancement minor Reggie v2.11.1 net.sf.basedb.reggie
#466 Incorrect titles in some sample processing statistics plots Nicklas Nordborg defect minor Reggie v2.11.1 net.sf.basedb.reggie
#467 Display guidelines when moving mouse over sample processing plots Nicklas Nordborg enhancement minor Reggie v2.11.1 net.sf.basedb.reggie
#422 Implement wizards for RNA->cDNA processing Nicklas Nordborg task critical Reggie v2.12 net.sf.basedb.reggie
#423 Implement wizards for cDNA->Library processing Nicklas Nordborg task critical Reggie v2.12 net.sf.basedb.reggie
#424 Select RNA items for library preparation Nicklas Nordborg task critical Reggie v2.12 net.sf.basedb.reggie
#425 Generate a lab protocol for RNA -> cDNA processing Nicklas Nordborg task major Reggie v2.12 net.sf.basedb.reggie
#427 Re-organize jsp files into subfolders Nicklas Nordborg enhancement minor Reggie v2.12 net.sf.basedb.reggie
#436 Import mRNA quality control results Nicklas Nordborg task major Reggie v2.12 net.sf.basedb.reggie
#440 Export data to files needed for mRNA/cDNA processing Nicklas Nordborg task major Reggie v2.12 net.sf.basedb.reggie
#441 Register cDNA plate as completed Nicklas Nordborg task major Reggie v2.12 net.sf.basedb.reggie
#456 Barcode layout wizard Nicklas Nordborg task critical Reggie v2.12 net.sf.basedb.reggie
#457 Generate lab protocol for cDNA -> Library preparation Nicklas Nordborg task major Reggie v2.12 net.sf.basedb.reggie
#468 NullPointerException when registering Caliper results if Plate name value is missing Nicklas Nordborg enhancement major Reggie v2.12 net.sf.basedb.reggie
#469 Better handling of login timeout in Reggie wizards Nicklas Nordborg enhancement major Reggie v2.12 net.sf.basedb.reggie
#470 Add 'Print version' functionality to the 'Case summary' feature Nicklas Nordborg enhancement major Reggie v2.12 net.sf.basedb.reggie
#472 Export data to files needed for library preparation Nicklas Nordborg task major Reggie v2.12 net.sf.basedb.reggie
#473 Register library processing results Nicklas Nordborg task major Reggie v2.12 net.sf.basedb.reggie
#474 Depend on BASE 3.2.2 Nicklas Nordborg task critical Reggie v2.12 net.sf.basedb.reggie
#475 Improve box placement suggestion in specimen tube registration Nicklas Nordborg enhancement major Reggie v2.12 net.sf.basedb.reggie
#477 Display list of other case numbers associated with a patient in the 'Case summary' Nicklas Nordborg enhancement minor Reggie v2.12 net.sf.basedb.reggie
#478 Implement wizards for pooling Nicklas Nordborg task critical Reggie v2.12 net.sf.basedb.reggie
#479 Generate lab protocol for pooling Nicklas Nordborg task major Reggie v2.12 net.sf.basedb.reggie
#480 Register pooled libraries Nicklas Nordborg task major Reggie v2.12 net.sf.basedb.reggie
#482 RNA item without a Lysate parent cause NullPointerException in ScanBQuarterMonthReportServlet Nicklas Nordborg defect major Reggie v2.12 net.sf.basedb.reggie
#483 Missing sample data report update for "no specimen" olle enhancement minor Reggie v2.12 net.sf.basedb.reggie
#484 Consent count report should have an initial summary table olle enhancement major Reggie v2.12 net.sf.basedb.reggie
#485 Select libraries for pooling Nicklas Nordborg task major Reggie v2.12 net.sf.basedb.reggie
#486 Monthly operation list export should not have optional columns olle enhancement minor Reggie v2.12 net.sf.basedb.reggie
#487 Export information intended for INCA olle enhancement major Reggie v2.12 net.sf.basedb.reggie
#488 Add support for matching RNAQC items using location instead of names from the Caliper Well Table file Nicklas Nordborg enhancement minor Reggie v2.12 net.sf.basedb.reggie
#491 Laterality is not stored for NoSpecimen items in some cases Nicklas Nordborg defect minor Reggie v2.12 net.sf.basedb.reggie
#492 Do not allow specimen tube registration to select a different laterality than what already exists Nicklas Nordborg defect minor Reggie v2.12 net.sf.basedb.reggie
#493 NoSpecimen items are not displayed in case summary for cases that also has Specimen items Nicklas Nordborg defect major Reggie v2.12 net.sf.basedb.reggie
#494 Show number of items waiting for processing on the index page Nicklas Nordborg enhancement minor Reggie v2.12 net.sf.basedb.reggie
#495 The RNA QC registration wizard should use default path and filter on file subtypes Nicklas Nordborg enhancement minor Reggie v2.12 net.sf.basedb.reggie
#496 Sample source reports should initialize table data from new sites correctly olle defect minor Reggie v2.12 net.sf.basedb.reggie
#498 SCAN-B sites data should be updated with new entry for "Uppsala" olle task minor Reggie v2.12 net.sf.basedb.reggie
#277 Add the torrent extension to the download extensions page Jari Häkkinen Request major Bittorrent download service v0.2 not classified
#295 Configuration file for VirtualArray is missing a tab in 'desc' field Jari Häkkinen defect major VirtualArray 1.2 se.lu.onk series plug-ins
#297 VirtualArray should activate "average on reporter" setting Jari Häkkinen defect minor VirtualArray 1.2 se.lu.onk series plug-ins
#298 VirtualArray can work with 1-channel data Jari Häkkinen enhancement minor VirtualArray 1.2 se.lu.onk series plug-ins
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