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Ticket Summary Owner Type Priority Milestone Component
#395 Add 'laterality' column to the montly operation list export Nicklas Nordborg enhancement major Reggie v2.7 net.sf.basedb.reggie
#396 Use tab instead of comma as column separator for the monthly operation list export Nicklas Nordborg enhancement major Reggie v2.7 net.sf.basedb.reggie
#397 Add option to export item subtype in the monthly operation list Nicklas Nordborg enhancement major Reggie v2.7 net.sf.basedb.reggie
#398 Add option to export the monthly operation list for a full year Nicklas Nordborg enhancement major Reggie v2.7 net.sf.basedb.reggie
#399 Registration wizard should store laterality on NoSpecimen items Nicklas Nordborg enhancement major Reggie v2.7 net.sf.basedb.reggie
#400 Update NoSpecimen items with values for laterality Jari Häkkinen task major Reggie v2.7 net.sf.basedb.reggie
#401 Add 'case' column to the montly operation list export Nicklas Nordborg enhancement major Reggie v2.7 net.sf.basedb.reggie
#402 Default protocol selection Nicklas Nordborg enhancement major Reggie v2.7 net.sf.basedb.reggie
#403 NullPointerException when using the TDMS exporter Nicklas Nordborg defect major MeV Launcher 1.10 net.sf.basedb.mev
#404 Record if more than one piece has been used for Allprep Nicklas Nordborg task major Reggie v2.7 net.sf.basedb.reggie
#406 Update to MeV 4.8 Nicklas Nordborg task major MeV Launcher 1.10 net.sf.basedb.mev
#408 Caliper importer should import NA values as -100 Nicklas Nordborg enhancement major Reggie v2.7 net.sf.basedb.reggie
#410 Create an example extensions for logging Nicklas Nordborg task major Example code v1.5 net.sf.basedb.examplecode
#414 The NanoDrop import wizard doesn't accept '0' values Nicklas Nordborg defect major Reggie v2.8 net.sf.basedb.reggie
#416 Check consent before exporting "monthly operation list" Nicklas Nordborg enhancement major Reggie v2.8 net.sf.basedb.reggie
#417 Enable core biopsy 'C' suffix for all sites Nicklas Nordborg enhancement major Reggie v2.9 net.sf.basedb.reggie
#419 Allow user to select resolution in sample count report olle enhancement major Reggie v2.9 net.sf.basedb.reggie
#420 Sample count report should have two columns for summed data olle enhancement major Reggie v2.9 net.sf.basedb.reggie
#421 Sample count report does not always handle all views correctly olle defect major Reggie v2.9 net.sf.basedb.reggie
#425 Generate a lab protocol for RNA -> cDNA processing Nicklas Nordborg task major Reggie v2.12 net.sf.basedb.reggie
#426 Consent count report generator olle enhancement major Reggie v2.9 net.sf.basedb.reggie
#428 Reports should have sites in alphabetic order and a column with latest item dates olle enhancement major Reggie v2.9 net.sf.basedb.reggie
#429 Blood samples should store sampling date as creation date Nicklas Nordborg defect major Reggie v2.9 net.sf.basedb.reggie
#430 Consent count report should allow time period selection olle enhancement major Reggie v2.9 net.sf.basedb.reggie
#431 Add option for exporting PAT-id in the montly operation list Nicklas Nordborg enhancement major Reggie v2.9 net.sf.basedb.reggie
#433 Patient count report generator olle enhancement major Reggie v2.9 net.sf.basedb.reggie
#434 Sample count report should allow selection of specimen or blood sample olle enhancement major Reggie v2.9 net.sf.basedb.reggie
#435 Depend on BASE 3.2 Nicklas Nordborg enhancement major Reggie v2.10 net.sf.basedb.reggie
#436 Import mRNA quality control results Nicklas Nordborg task major Reggie v2.12 net.sf.basedb.reggie
#437 Rules for comparing 'sampling date' and 'RNA later' date should be the same Nicklas Nordborg defect major Reggie v2.10 net.sf.basedb.reggie
#438 Overview report olle enhancement major Reggie v2.10 net.sf.basedb.reggie
#439 Missing sample data report olle enhancement major Reggie v2.10 net.sf.basedb.reggie
#440 Export data to files needed for mRNA/cDNA processing Nicklas Nordborg task major Reggie v2.12 net.sf.basedb.reggie
#441 Register cDNA plate as completed Nicklas Nordborg task major Reggie v2.12 net.sf.basedb.reggie
#443 Sample count report should allow selection of "no specimen" items olle enhancement major Reggie v2.10 net.sf.basedb.reggie
#445 The HE glass registration wizard should have comment fields Nicklas Nordborg enhancement major Reggie v2.10 net.sf.basedb.reggie
#446 The Paraffin block registration wizard should have comment fields Nicklas Nordborg enhancement major Reggie v2.10 net.sf.basedb.reggie
#447 The HE glass registration wizard should have a field for the number of slides Nicklas Nordborg enhancement major Reggie v2.10 net.sf.basedb.reggie
#449 Add support for follow-up blood samples to the blood registration wizard olle enhancement major Reggie v2.13 net.sf.basedb.reggie
#450 Show information about a case/patient Nicklas Nordborg task major Reggie v2.11 net.sf.basedb.reggie
#452 Consent count report should not count missing constents as consents with unknown date olle enhancement major Reggie v2.10.1 net.sf.basedb.reggie
#453 Incorrect registration of case if consent form is registered before blood referral form and no pathology referral form exists Nicklas Nordborg defect major Reggie v2.10.2 net.sf.basedb.reggie
#454 NanoDrop import wizard fails to import files with multiple measurements of the same sample in some cases Nicklas Nordborg defect major Reggie v2.11 net.sf.basedb.reggie
#455 Flagged RNA re-processing wizard Nicklas Nordborg task major Reggie v3.2 net.sf.basedb.reggie
#457 Generate lab protocol for cDNA -> Library preparation Nicklas Nordborg task major Reggie v2.12 net.sf.basedb.reggie
#459 Common table report utilities should be placed in its own class olle enhancement major Reggie v2.11 net.sf.basedb.reggie
#461 Sample processing report generator olle enhancement major Reggie v2.11 net.sf.basedb.reggie
#464 Implement a 'Print' button for table listings Nicklas Nordborg task major Print package v1.0 net.sf.basedb.print
#468 NullPointerException when registering Caliper results if Plate name value is missing Nicklas Nordborg enhancement major Reggie v2.12 net.sf.basedb.reggie
#469 Better handling of login timeout in Reggie wizards Nicklas Nordborg enhancement major Reggie v2.12 net.sf.basedb.reggie
#470 Add 'Print version' functionality to the 'Case summary' feature Nicklas Nordborg enhancement major Reggie v2.12 net.sf.basedb.reggie
#472 Export data to files needed for library preparation Nicklas Nordborg task major Reggie v2.12 net.sf.basedb.reggie
#473 Register library processing results Nicklas Nordborg task major Reggie v2.12 net.sf.basedb.reggie
#475 Improve box placement suggestion in specimen tube registration Nicklas Nordborg enhancement major Reggie v2.12 net.sf.basedb.reggie
#479 Generate lab protocol for pooling Nicklas Nordborg task major Reggie v2.12 net.sf.basedb.reggie
#480 Register pooled libraries Nicklas Nordborg task major Reggie v2.12 net.sf.basedb.reggie
#482 RNA item without a Lysate parent cause NullPointerException in ScanBQuarterMonthReportServlet Nicklas Nordborg defect major Reggie v2.12 net.sf.basedb.reggie
#484 Consent count report should have an initial summary table olle enhancement major Reggie v2.12 net.sf.basedb.reggie
#485 Select libraries for pooling Nicklas Nordborg task major Reggie v2.12 net.sf.basedb.reggie
#487 Export information intended for INCA olle enhancement major Reggie v2.12 net.sf.basedb.reggie
#489 Histology scoring wizard Nicklas Nordborg task major Reggie v2.14 net.sf.basedb.reggie
#493 NoSpecimen items are not displayed in case summary for cases that also has Specimen items Nicklas Nordborg defect major Reggie v2.12 net.sf.basedb.reggie
#497 Center (se.lu.onk.Center) median calculation is flawed and should be replaced olle defect major ZZ Other tickets se.lu.onk series plug-ins
#499 Export sample sheet for flow cell Nicklas Nordborg task major Reggie v2.13 net.sf.basedb.reggie
#503 Change pooling strategy Nicklas Nordborg enhancement major Reggie v2.13 net.sf.basedb.reggie
#504 Allow target volume/library in a pool to be changed Nicklas Nordborg enhancement major Reggie v2.13 net.sf.basedb.reggie
#505 Sample source reports should be updated to support follow-up blood samples olle enhancement major Reggie v2.13 net.sf.basedb.reggie
#511 Consent information not copied from PreNeo blood registration Nicklas Nordborg defect major Reggie v2.13 net.sf.basedb.reggie
#512 Updates to the register pooled libraries wizard Nicklas Nordborg enhancement major Reggie v2.13 net.sf.basedb.reggie
#516 Include empty rows in list view of pool protocol Nicklas Nordborg enhancement major Reggie v2.13 net.sf.basedb.reggie
#520 Store Qiacube annotation on FlowThrough items Nicklas Nordborg defect major Reggie v2.13 net.sf.basedb.reggie
#521 Add DNA and FlowThrough information to Case summary page Nicklas Nordborg enhancement major Reggie v2.13 net.sf.basedb.reggie
#524 Auto-select RNA wizard should be able to start from a specific date Nicklas Nordborg enhancement major Reggie v2.14 net.sf.basedb.reggie
#525 Import data from INCA olle task major Reggie v4.4 net.sf.basedb.reggie
#526 Retraction wizard olle task major Reggie v2.17 net.sf.basedb.reggie
#527 Implement manual pooled library selection Nicklas Nordborg enhancement major Reggie v2.14 net.sf.basedb.reggie
#528 Restrict access to some registation wizards Nicklas Nordborg enhancement major Reggie v2.14 net.sf.basedb.reggie
#529 Retrieve and store temperature and humidity measurements olle task major LabEnv v1.0 net.sf.basedb.labenv
#530 Display logs from temperature and humidity measurements olle task major Reggie v2.16 net.sf.basedb.reggie
#534 Show case summary if given a personal number olle enhancement major Reggie v2.14 net.sf.basedb.reggie
#537 Allow 10µl as max volume in Create pooled libraries wizard Nicklas Nordborg enhancement major Reggie v2.14 net.sf.basedb.reggie
#541 net.sf.basedb.normalizers: Normalizers should store normalized data in proper base olle Request major Normalization package v1.1 net.sf.basedb.normalizers
#542 PAD should be a PatientCurator annotation Nicklas Nordborg enhancement major Reggie v2.14 net.sf.basedb.reggie
#545 Register sequencing as ended Nicklas Nordborg task major Reggie v2.15 net.sf.basedb.reggie
#546 Confirm sequencing as completed Nicklas Nordborg task major Reggie v2.15 net.sf.basedb.reggie
#547 Start Demux and Merge Nicklas Nordborg task major Reggie v2.16 net.sf.basedb.reggie
#548 Register Demux and Merge as ended Nicklas Nordborg task major Reggie v2.16 net.sf.basedb.reggie
#550 Overview report should show number of patients having a sample type item olle enhancement major Reggie v2.14 net.sf.basedb.reggie
#553 Set different volume and mixing strategy for pools on a plate Nicklas Nordborg enhancement major Reggie v2.14 net.sf.basedb.reggie
#559 Download HE glass labels after registration of paraffin blocks Nicklas Nordborg task major Reggie v2.15 net.sf.basedb.reggie
#565 Missing sample data report should support sample list export olle enhancement major Reggie v2.15 net.sf.basedb.reggie
#568 Update to MEV 4.9 Nicklas Nordborg enhancement major MeV Launcher 1.11 net.sf.basedb.mev
#569 Sample list export for missing consent data olle enhancement major Reggie v2.15 net.sf.basedb.reggie
#572 Use different barcode for pools from the same plate Nicklas Nordborg enhancement major Reggie v2.15 net.sf.basedb.reggie
#573 Implement a fake data generator for Qubit and Caliper files used in the Library registration wizard Nicklas Nordborg enhancement major Reggie v2.15 net.sf.basedb.reggie
#574 Missing data sample list export from consent and missing sample data reports olle enhancement major Reggie v2.15 net.sf.basedb.reggie
#577 Flag histology items in HE glass/scoring wizard Nicklas Nordborg enhancement major Reggie v2.15 net.sf.basedb.reggie
#591 Add support for new assay type to Caliper run parameters export Nicklas Nordborg enhancement major Reggie v2.15 net.sf.basedb.reggie
#592 Lab environment extension improved report routines olle enhancement major LabEnv v1.1 net.sf.basedb.labenv
#593 Start masking and alignment Nicklas Nordborg task major Reggie v2.16 net.sf.basedb.reggie
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