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Ticket Summary Owner Type Priority Milestone Component
#26 Print result table as Output txt Johan Enell enhancement trivial se.lu.onk.ztest
#27 No limit on result list Johan Enell defect trivial se.lu.onk.ztest
#31 More reporter info Johan Enell enhancement trivial se.lu.onk.ztest
#124 files in Normalization package state they're are part of Illumina package Martin Svensson defect trivial Normalization package v1.0 net.sf.basedb.normalizers
#255 link to APT plug-in times out Jari Häkkinen defect trivial ZZ Other tickets tracpages
#352 'Consent date' annotation is not added to the 'Case' annotation type category Nicklas Nordborg defect trivial Reggie v2.2 net.sf.basedb.reggie
#519 Date fields should not allow 6-digit dates olle defect trivial Reggie v2.13 net.sf.basedb.reggie
#535 The Flagged RNA dialog doesn't round numeric values Nicklas Nordborg enhancement trivial Reggie v2.14 net.sf.basedb.reggie
#536 Case summary display should remember the 'pageType' parameter Nicklas Nordborg defect trivial Reggie v2.14 net.sf.basedb.reggie
#570 Installation wizard incorrectly display '0 more...' Nicklas Nordborg defect trivial Reggie v2.15 net.sf.basedb.reggie
#576 Error message container for case summary hidden behind tool bar olle defect trivial Reggie v2.15 net.sf.basedb.reggie
#590 Couting number of items on the index page block interactions Nicklas Nordborg defect trivial Reggie v2.15 net.sf.basedb.reggie
#607 Date /time format is different in configuration file and GUI olle Request trivial LabEnv v1.2 net.sf.basedb.labenv
#626 NullPointerException when registering follow-up blood Nicklas Nordborg defect trivial Reggie v2.16 net.sf.basedb.reggie
#633 Adapter peak fraction=0 is displayed as 'unknown' in the pooling wizard Nicklas Nordborg defect trivial Reggie v2.16 net.sf.basedb.reggie
#639 Case summary may throw ItemNotFoundException Nicklas Nordborg defect trivial Reggie v2.16 net.sf.basedb.reggie
#648 More help texts in the specimen tube registration wizard Nicklas Nordborg enhancement trivial Reggie v2.16.1 net.sf.basedb.reggie
#649 Better balance in progress when demuxing Nicklas Nordborg enhancement trivial Reggie v2.16.1 net.sf.basedb.reggie
#666 Default number of slots for demux should be 4 Nicklas Nordborg enhancement trivial Reggie v2.16.2 net.sf.basedb.reggie
#694 Path-element tags should use subclass instad of clazz Nicklas Nordborg defect trivial Reggie v2.17.1 net.sf.basedb.reggie
#731 Installation wizard should enable AutoProcessing annotation for raw bioassays Nicklas Nordborg defect trivial Reggie v3.1 net.sf.basedb.reggie
#743 The second trimmomatic step in demux script may not include options Nicklas Nordborg defect trivial Reggie v3.2 net.sf.basedb.reggie
#760 Prepare for adding help texts in reggie wizards Nicklas Nordborg task trivial Reggie v3.2.1 net.sf.basedb.reggie
#817 Always display rna box position in normalization protocol Nicklas Nordborg enhancement trivial Reggie v3.7 net.sf.basedb.reggie
#840 Change cutoff for Caliper HiSense to 50ng/µl Nicklas Nordborg enhancement trivial Reggie v4.1 net.sf.basedb.reggie
#872 Register Reggie as a start page Nicklas Nordborg task trivial Reggie v4.4 net.sf.basedb.reggie
#886 Add thousand separator to counter on Reggie start page Nicklas Nordborg enhancement trivial Reggie v4.4 net.sf.basedb.reggie
#899 There is an empty line in 'cohortCase.txt' Nicklas Nordborg defect trivial Reggie v4.6 net.sf.basedb.reggie
#903 The Inca import wizard is no longer experimental Nicklas Nordborg defect trivial Reggie v4.7 net.sf.basedb.reggie
#921 Delivery client should set session control in <base:page> taglib Nicklas Nordborg enhancement trivial Reggie v4.9 net.sf.basedb.reggie
#943 Incorrect default value for <tmp-folder> in opengrid-config.xml defect trivial Open Grid Scheduler service v1.1 net.sf.basedb.opengrid
#946 Yubikey styelsheet is missing on the login page Nicklas Nordborg defect trivial YubiKey v1.4 net.sf.basedb.yubikey
#952 The "Register Caliper files" checkbox in the "Library registration" registration wizard should be unchecked by default Nicklas Nordborg enhancement trivial Reggie v4.9.3 net.sf.basedb.reggie
#967 Misaligned table columns in retraction follow up wizard Nicklas Nordborg defect trivial Reggie v4.10 net.sf.basedb.reggie
#1061 Display existing consent date in the consent form registration wizard Nicklas Nordborg enhancement trivial Reggie v4.19 net.sf.basedb.reggie
#1175 Temporary R working files may be left in open state Nicklas Nordborg defect trivial Reggie v4.23 net.sf.basedb.reggie
#1177 Remove <add-read-groups-options> from reggie-config.xml Nicklas Nordborg Request trivial Reggie v4.23.1 net.sf.basedb.reggie
#1180 Activity log entry for "sequencing ended" should be registered by "Auto-confirm" user Nicklas Nordborg defect trivial Reggie v4.23.1 net.sf.basedb.reggie
#1182 Activity log entry for "pilot reports" should be registered by "Auto-confirm" user Nicklas Nordborg defect trivial Reggie v4.23.1 net.sf.basedb.reggie
#1189 The retraction destruction wizard try to connect to the file server even if there are no files to delete Nicklas Nordborg defect trivial Reggie v4.24 net.sf.basedb.reggie
#1191 Remove debug output from GenotypeMessage Nicklas Nordborg defect trivial Reggie v4.23.2 net.sf.basedb.reggie
#1197 Rounding effects may cause the mRNA protocol to incorrectly display "Large mix" Nicklas Nordborg defect trivial Reggie v4.24 net.sf.basedb.reggie
#1223 Implement an option to skip labels for the Histology specimen in the partitioning wizard Nicklas Nordborg enhancement trivial Reggie v4.25 net.sf.basedb.reggie
#1 Reformat plug-ins archive/download page to look like the rest of the trac environment. Jari Häkkinen task minor tracpages
#17 Export RMA bioassayset as a tab delimited file Jari Häkkinen enhancement minor se.lu.thep.affymetrix
#28 Create plot observed/expected Johan Enell enhancement minor se.lu.onk.ztest
#29 Create plot FDR vs rank Johan Enell enhancement minor se.lu.onk.ztest
#30 Create combination plot Johan Enell enhancement minor se.lu.onk.ztest
#32 Create histogram plot Johan Enell enhancement minor se.lu.onk.ztest
#42 Add sample extended-properties.xml and configuration files needed for BASE plug-ins. Jari Häkkinen enhancement minor se.lu.thep.affymetrix
#46 RMAExpress wiki page Peter Johansson task minor tracpages
#59 --with-gsl configure option Peter Johansson task minor se.lu.thep.wenni
#64 configure does not find basefile.h Jari Häkkinen defect minor se.lu.thep.wenni 0.7 se.lu.thep.wenni
#65 version number in BASE1 plugin is not updated automatically Peter Johansson enhancement minor se.lu.thep.wenni
#72 NNIFileConverter should not be installed in base2 mode Peter Johansson task minor se.lu.thep.wenni
#140 Add support in build.xml for automatic download of BASE jar files Nicklas Nordborg enhancement minor Illumina package v1.2 net.sf.basedb.illumina
#150 Fix layout of DetectionPValue.java Nicklas Nordborg task minor Illumina package v1.2 net.sf.basedb.illumina
#198 Change source files to UTF-8 Nicklas Nordborg task minor Extension examples v1.1 net.sf.basedb.examples.extensions
#199 Change source files to UTF-8 Nicklas Nordborg task minor Plugin examples v2.x net.sf.basedb.examples.plugins
#200 Change source files to UTF-8 Nicklas Nordborg task minor Web services examples v3.0 net.sf.basedb.examples.webservices
#201 Change source files to UTF-8 Nicklas Nordborg task minor FTP Server v1.1 net.sf.basedb.ftp
#202 Change source files to UTF-8 Nicklas Nordborg task minor Illumina package v1.4 net.sf.basedb.illumina
#203 Change source files to UTF-8 Nicklas Nordborg task minor MEV Launcher v1.3 net.sf.basedb.mev
#272 Handle CWD . commands correctly Nicklas Nordborg enhancement minor FTP Server v1.1 net.sf.basedb.ftp
#275 Version should autopropagate from build.xml Nicklas Nordborg task minor MeV Launcher v1.7 net.sf.basedb.mev
#276 Version should autopropagate from build.xml Nicklas Nordborg task minor FTP Server v1.1 net.sf.basedb.ftp
#283 Change "source" and "target" compilation options to 1.6 Nicklas Nordborg defect minor Example code v1.3 net.sf.basedb.examples.extensions
#284 Change "source" and "target" compilation options to 1.6 Nicklas Nordborg defect minor FTP Server v1.2 net.sf.basedb.ftp
#285 Change "source" and "target" compilation options to 1.6 Nicklas Nordborg defect minor Illumina package v1.7 net.sf.basedb.illumina
#286 Change "source" and "target" compilation options to 1.6 Nicklas Nordborg defect minor MeV Launcher v1.8 net.sf.basedb.mev
#288 Change "source" and "target" compilation options to 1.6 Nicklas Nordborg defect minor Web services examples v3.0 net.sf.basedb.examples.webservices
#289 Add 'download-lib' target to ant buildfile and remove checked in BASE jar file Nicklas Nordborg enhancement minor Plugin examples v2.x net.sf.basedb.examples.plugins
#290 Add 'download-lib' target to ant buildfile and remove checked in BASE jar file Nicklas Nordborg enhancement minor Web services examples v3.0 net.sf.basedb.examples.webservices
#297 VirtualArray should activate "average on reporter" setting Jari Häkkinen defect minor VirtualArray 1.2 se.lu.onk series plug-ins
#298 VirtualArray can work with 1-channel data Jari Häkkinen enhancement minor VirtualArray 1.2 se.lu.onk series plug-ins
#301 Make sure installation instructions for VirtualArray are correct Jari Häkkinen defect minor VirtualArray 1.2 se.lu.onk series plug-ins
#351 Check case name in all wizards Nicklas Nordborg enhancement minor Reggie v2.2 net.sf.basedb.reggie
#356 Warning message about non-standard personal number is not shown when <enter> is used Nicklas Nordborg defect minor Reggie v2.3 net.sf.basedb.reggie
#359 Changes related to new GUI in BASE 3.1 Nicklas Nordborg enhancement minor Example code v1.4 net.sf.basedb.examplecode
#363 Add 'install' target to ant build script Nicklas Nordborg enhancement minor Illumina package v1.8 net.sf.basedb.illumina
#378 Consent registration wizard should display consent date if it is already registered Nicklas Nordborg defect minor Reggie v2.4 net.sf.basedb.reggie
#382 Remove the referral form registration wizard Nicklas Nordborg task minor Reggie v2.5 net.sf.basedb.reggie
#383 Remove BASE 3.0 CSS support Nicklas Nordborg task minor Reggie v2.5 net.sf.basedb.reggie
#384 RNAQC subtype should set the 'Push annotations to parent' option Nicklas Nordborg enhancement minor Reggie v2.5 net.sf.basedb.reggie
#387 The ROOT user doesn't have permission to use several reggie wizards Nicklas Nordborg defect minor Reggie v2.6 net.sf.basedb.reggie
#391 The 'Sample report' wizard should use the new Site information Nicklas Nordborg enhancement minor Reggie v2.6 net.sf.basedb.reggie
#392 Redesign reggie wizards that result in long pages Nicklas Nordborg enhancement minor Reggie v2.6 net.sf.basedb.reggie
#405 Update certificate used for signing the web start files Nicklas Nordborg task minor MeV Launcher 1.10 net.sf.basedb.mev
#409 The sample count report generator doesn't filter on current project Nicklas Nordborg defect minor Reggie v2.7 net.sf.basedb.reggie
#412 Qiacube/nanodrop wizard should have default RNA volume=51µl Nicklas Nordborg enhancement minor Reggie v2.7 net.sf.basedb.reggie
#415 Accept small 'c' in case barcode Nicklas Nordborg defect minor Reggie v2.8 net.sf.basedb.reggie
#427 Re-organize jsp files into subfolders Nicklas Nordborg enhancement minor Reggie v2.12 net.sf.basedb.reggie
#432 The monthly operation list should include column headers Nicklas Nordborg enhancement minor Reggie v2.9 net.sf.basedb.reggie
#442 Allow pathology and blood registration wizards to save patients without names Nicklas Nordborg enhancement minor Reggie v2.10 net.sf.basedb.reggie
#444 The 'Plasma/serum' checkbox should be checked by default in the blood registration wizard olle enhancement minor Reggie v2.10 net.sf.basedb.reggie
#448 Register comments for blood samples olle enhancement minor Reggie v2.10 net.sf.basedb.reggie
#458 Sample count report should be refactored to use week codes with leading 0 olle enhancement minor Reggie v2.11 net.sf.basedb.reggie
#465 Improve printing of canvas elements Nicklas Nordborg enhancement minor Reggie v2.11.1 net.sf.basedb.reggie
#466 Incorrect titles in some sample processing statistics plots Nicklas Nordborg defect minor Reggie v2.11.1 net.sf.basedb.reggie
#467 Display guidelines when moving mouse over sample processing plots Nicklas Nordborg enhancement minor Reggie v2.11.1 net.sf.basedb.reggie
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