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Ticket Summary Owner Type Priority Milestone Component
#1010 2by16offset is missing from PoolSchema annotation Nicklas Nordborg defect minor Reggie v4.14 net.sf.basedb.reggie
#415 Accept small 'c' in case barcode Nicklas Nordborg defect minor Reggie v2.8 net.sf.basedb.reggie
#1182 Activity log entry for "pilot reports" should be registered by "Auto-confirm" user Nicklas Nordborg defect trivial Reggie v4.23.1 net.sf.basedb.reggie
#1180 Activity log entry for "sequencing ended" should be registered by "Auto-confirm" user Nicklas Nordborg defect trivial Reggie v4.23.1 net.sf.basedb.reggie
#633 Adapter peak fraction=0 is displayed as 'unknown' in the pooling wizard Nicklas Nordborg defect trivial Reggie v2.16 net.sf.basedb.reggie
#651 Add 1x16 pool schema to create mRNA plate wizard Nicklas Nordborg enhancement major Reggie v2.17 net.sf.basedb.reggie
#765 Add 3x16 pool schema to create mRNA plate wizard Nicklas Nordborg enhancement major Reggie v3.2.2 net.sf.basedb.reggie
#1251 Add a mode to SSP plugin that run models for all rawbioassays with no value Nicklas Nordborg enhancement major Reggie v4.27.1 net.sf.basedb.reggie
#637 Add annotations for lot numbers in the DNA/RNA/FlowThrough registration Nicklas Nordborg task major Reggie v2.16 net.sf.basedb.reggie
#1112 Add a predefined option in the referral form registration when a case is registered without referral form Nicklas Nordborg enhancement minor Reggie v4.22 net.sf.basedb.reggie
#224 Add a "Test" button on the GenePattern 'edit server' page Nicklas Nordborg enhancement major ZZ GenePattern integration v1.0 net.sf.basedb.genepattern
#336 Add bioplate test data Nicklas Nordborg task major Reggie v2.0 net.sf.basedb.reggie
#37 Add box-plot output Johan Enell enhancement major se.lu.onk.smooth
#401 Add 'case' column to the montly operation list export Nicklas Nordborg enhancement major Reggie v2.7 net.sf.basedb.reggie
#1202 Add check for duplicate barcode template in the MIPs library registration Nicklas Nordborg enhancement major Reggie v4.24.1 net.sf.basedb.reggie
#1014 Add column definition for "LibPlate" to derived bioassays and raw bioassays list pages Nicklas Nordborg enhancement major Reggie v4.14 net.sf.basedb.reggie
#1166 Add configuration setting for disabling counting stray folders Nicklas Nordborg enhancement minor Reggie v4.23 net.sf.basedb.reggie
#51 add configure options to WeNNI Peter Johansson task major se.lu.thep.wenni
#877 Add counter for consent forms Nicklas Nordborg enhancement minor Reggie v4.3 net.sf.basedb.reggie
#800 Add counter for total number of scored histology samples Nicklas Nordborg enhancement minor Reggie v3.5 net.sf.basedb.reggie
#631 Add data check to the confirm sequencing ended wizard Nicklas Nordborg enhancement major Reggie v2.16 net.sf.basedb.reggie
#521 Add DNA and FlowThrough information to Case summary page Nicklas Nordborg enhancement major Reggie v2.13 net.sf.basedb.reggie
#917 Add downloaded colum to yellow label tracking wizard Nicklas Nordborg enhancement major Reggie v4.8 net.sf.basedb.reggie
#289 Add 'download-lib' target to ant buildfile and remove checked in BASE jar file Nicklas Nordborg enhancement minor Plugin examples v2.x net.sf.basedb.examples.plugins
#290 Add 'download-lib' target to ant buildfile and remove checked in BASE jar file Nicklas Nordborg enhancement minor Web services examples v3.0 net.sf.basedb.examples.webservices
#282 Add example of an edit-dialog extension Nicklas Nordborg task major Example code v1.3 net.sf.basedb.examples.extensions
#708 Add example skin Nicklas Nordborg task major Example code v1.7 net.sf.basedb.examplecode
#233 Add example that uses the alternate approach for invoking servlets Nicklas Nordborg enhancement major Extension examples v1.2 net.sf.basedb.examples.extensions
#299 Add field for PAD when no specimen tubes exists for a case Nicklas Nordborg enhancement major Reggie v1.1 net.sf.basedb.reggie
#1228 Add file actions for viewing genotype and variant information Nicklas Nordborg enhancement major Reggie v4.26 net.sf.basedb.reggie
#1001 Add HaplotypeCaller to Hisat align step Nicklas Nordborg enhancement major Reggie v4.13 net.sf.basedb.reggie
#345 Add header line to csv file that can be downloaded from the partition wizard Nicklas Nordborg enhancement major Reggie v2.1 net.sf.basedb.reggie
#100 Add Illumina SNP platform to the installation program Martin Svensson enhancement critical Illumina package v1.0 net.sf.basedb.illumina
#1021 Add INCA 2.0 columns to the blacklist enhancement major INCA XML to CSV converter 1.2 net.sf.basedb.inca
#820 Add "Inconclusive" as an option to the IHCQuality annotation Nicklas Nordborg enhancement minor Reggie v3.7 net.sf.basedb.reggie
#177 Add information about how to upgrade the normalization package. Martin Svensson task major Normalization package v1.1 net.sf.basedb.normalizers
#44 Add information on how to compile RMAExpressConsole to the RMAExpress plug-in page Jari Häkkinen enhancement major se.lu.thep.affymetrix
#104 Add information that BASE2WSClient.jar is needed to compile the plug-ins Jari Häkkinen defect major Illumina package v1.1 net.sf.basedb.illumina
#109 Add information to the wiki page on how to give feedback on the Illumina package Nicklas Nordborg task major Illumina package v1.1 net.sf.basedb.illumina
#362 Add 'install' target to ant build script Nicklas Nordborg task major MeV Launcher v1.9 net.sf.basedb.mev
#363 Add 'install' target to ant build script Nicklas Nordborg enhancement minor Illumina package v1.8 net.sf.basedb.illumina
#551 Add 'install' target to normalizers build script Martin Svensson enhancement minor Normalization package v1.1 net.sf.basedb.normalizers
#395 Add 'laterality' column to the montly operation list export Nicklas Nordborg enhancement major Reggie v2.7 net.sf.basedb.reggie
#471 Add library preparation information to the 'Case summary' feature olle enhancement minor Reggie v2.13 net.sf.basedb.reggie
#1284 Add link to SCAN-B report in Case summary Nicklas Nordborg enhancement major Reggie v4.29 net.sf.basedb.reggie
#1185 Add link to the demultiplex metrics file in the "Confirm demux" wizards Nicklas Nordborg enhancement minor Reggie v4.23.1 net.sf.basedb.reggie
#1080 Add "Manual" option to the DoNotUse annotation type Nicklas Nordborg enhancement major Reggie v4.21 net.sf.basedb.reggie
#1015 Add masking step to Hisat pipeline Nicklas Nordborg enhancement major Reggie v4.15 net.sf.basedb.reggie
#1068 Add mBAF analysis step to the Hisat/StringTie pipeline Nicklas Nordborg task major Reggie v4.20 net.sf.basedb.reggie
#1083 Add mBAF plot column to derived bioassay list Nicklas Nordborg enhancement minor Reggie v4.21 net.sf.basedb.reggie
#241 Add MeV Analysis file as a file type for bioassay sets Nicklas Nordborg task critical MeV Launcher v1.5 net.sf.basedb.mev
#246 Add MeV Analysis file to list of MIME types Nicklas Nordborg enhancement major MeV Launcher v1.5 net.sf.basedb.mev
#914 Add more columns to the blacklist Nicklas Nordborg task major INCA XML to CSV converter 1.1 net.sf.basedb.inca
#1074 Add more subtypes Nicklas Nordborg enhancement major Relax v1.4 not classified
#1276 Add more thumbnail sizes Nicklas Nordborg enhancement major Thumbnails v1.2 net.sf.basedb.thumbnails
#1247 Add more translations to SSP plug-in Nicklas Nordborg enhancement major Reggie v4.27.1 net.sf.basedb.reggie
#790 Add new site: Jönköping Nicklas Nordborg task major Reggie v3.5 net.sf.basedb.reggie
#431 Add option for exporting PAT-id in the montly operation list Nicklas Nordborg enhancement major Reggie v2.9 net.sf.basedb.reggie
#397 Add option to export item subtype in the monthly operation list Nicklas Nordborg enhancement major Reggie v2.7 net.sf.basedb.reggie
#398 Add option to export the monthly operation list for a full year Nicklas Nordborg enhancement major Reggie v2.7 net.sf.basedb.reggie
#204 Add option to include all available negative controls in detection P-value calculation Jari Häkkinen enhancement major Illumina package v1.4 net.sf.basedb.illumina
#1103 Add permission check for downloading INCA report files Nicklas Nordborg defect critical Reggie v4.21 net.sf.basedb.reggie
#470 Add 'Print version' functionality to the 'Case summary' feature Nicklas Nordborg enhancement major Reggie v2.12 net.sf.basedb.reggie
#962 Add ReferenceDate annotation to Case Nicklas Nordborg task critical Reggie v4.10 net.sf.basedb.reggie
#628 Add right-click menu to create pools wizard Nicklas Nordborg enhancement minor Reggie v2.18 net.sf.basedb.reggie
#42 Add sample extended-properties.xml and configuration files needed for BASE plug-ins. Jari Häkkinen enhancement minor se.lu.thep.affymetrix
#533 Add secondary analysis section to Reggie Nicklas Nordborg task critical Reggie v2.16 net.sf.basedb.reggie
#575 Add sequencing information to case summary Nicklas Nordborg enhancement minor Reggie v2.15 net.sf.basedb.reggie
#811 Add support for adding personal information to the Gene report combiner plug-in Nicklas Nordborg enhancement major Reggie v3.7 net.sf.basedb.reggie
#787 Add support for BloodDNA items olle task major Reggie v3.4 net.sf.basedb.reggie
#1003 Add support for disabling/pausing a pipeline Nicklas Nordborg enhancement major Reggie v4.13 net.sf.basedb.reggie
#892 Add support for enforcing YubiKey login depending on client Nicklas Nordborg enhancement major YubiKey v1.3 net.sf.basedb.yubikey
#212 Add support for exporting CGH data to MeV Nicklas Nordborg task major MEV Launcher v1.3 net.sf.basedb.mev
#933 Add support for exporting files to a remote server to the Release exporter plug-in Nicklas Nordborg enhancement major Reggie v4.10 net.sf.basedb.reggie
#1232 Add support for external sequencing Nicklas Nordborg task critical Reggie v4.26 net.sf.basedb.reggie
#1214 Add support for external specimen Nicklas Nordborg task major Reggie v4.25 net.sf.basedb.reggie
#449 Add support for follow-up blood samples to the blood registration wizard olle enhancement major Reggie v2.13 net.sf.basedb.reggie
#609 Add support for ignoring YubiKey login depending on client Nicklas Nordborg enhancement major YubiKey v1.1 net.sf.basedb.yubikey
#1233 Add support for importing relase data with variant calling task critical Relax v1.6 net.sf.basedb.relax
#488 Add support for matching RNAQC items using location instead of names from the Caliper Well Table file Nicklas Nordborg enhancement minor Reggie v2.12 net.sf.basedb.reggie
#237 Add support for MicroRNA BGX files to reporter importer Nicklas Nordborg Request major Illumina package v1.4 net.sf.basedb.illumina
#113 Add support for more variations of Illumina detection P-value calculations Jari Häkkinen enhancement major Illumina package v1.4 net.sf.basedb.illumina
#1274 Add support for NDPI images Nicklas Nordborg task major Thumbnails v1.2 net.sf.basedb.thumbnails
#591 Add support for new assay type to Caliper run parameters export Nicklas Nordborg enhancement major Reggie v2.15 net.sf.basedb.reggie
#1198 Add support for PAD to the "Map external data" wizard Nicklas Nordborg enhancement major Reggie v4.24 net.sf.basedb.reggie
#1270 Add support for pasting images to the Histology scoring wizard Nicklas Nordborg enhancement major Reggie v4.28 net.sf.basedb.reggie
#883 Add support for progress reporting to the Reggie wizard API Nicklas Nordborg enhancement major Reggie v4.4 net.sf.basedb.reggie
#1036 Add support for public/private key authentication enhancement major Open Grid Scheduler service v1.2 net.sf.basedb.opengrid
#716 Add support for Reggie to the gold skin enhancement major Skin-collection 1.1 net.sf.basedb.skincollection
#740 Add support for reprocessing specimen Nicklas Nordborg task critical Reggie v3.2 net.sf.basedb.reggie
#1231 Add support for sequencing with NovaSeq Nicklas Nordborg task major Reggie v4.26 net.sf.basedb.reggie
#956 Add support for SHA-256 fingerprints on file servers Nicklas Nordborg enhancement major External files support 1.3 net.sf.basedb.xfiles
#957 Add support for SHA-256 fingerprints on file servers enhancement major Open Grid Scheduler service v1.1 net.sf.basedb.opengrid
#1038 Add support for SSH connections with private key authentication Nicklas Nordborg task major External files support 1.4 net.sf.basedb.xfiles
#1209 Add support for storing TMA specimen Nicklas Nordborg task major Reggie v4.25 net.sf.basedb.reggie
#1028 Add support for StringTie data enhancement major Relax v1.2 net.sf.basedb.relax
#1128 Add support for svg images Nicklas Nordborg task major Thumbnails v1.1 net.sf.basedb.thumbnails
#893 Add support for using login+password+yubikey otp when logging in Nicklas Nordborg enhancement major YubiKey v1.3 net.sf.basedb.yubikey
#1162 Add support for using 'M' in the read-string when demuxing Nicklas Nordborg enhancement major Reggie v4.23 net.sf.basedb.reggie
#316 Add support for 'YYYYMMDD' date format in the 'Consent form registration wizard' Martin Svensson enhancement major Reggie v1.4 net.sf.basedb.reggie
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