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Ticket Summary Owner Type Priority Milestone Component
#248 net.sf.basedb.illumina: The background correction plug-in should store the background intensity Jari Häkkinen enhancement major Illumina package v1.5 net.sf.basedb.illumina
#249 net.sf.basedb.illumina: Version should autopropagate from build.xml to Illumina.java Nicklas Nordborg task major Illumina package v1.6 net.sf.basedb.illumina
#251 net.sf.basedb.illumina: Describe the overview plots in README_PluginDetails Jari Häkkinen task major Illumina package v1.5 net.sf.basedb.illumina
#252 net.sf.basedb.illumina: The background correction plug-in should store the reporters used for background calculations Jari Häkkinen Request major Illumina package v1.5 net.sf.basedb.illumina
#258 Update to MeV 4.5.1 Nicklas Nordborg task major MeV Launcher v1.6 net.sf.basedb.mev
#259 Apply patch provided in the BASE dev list to Tab2MageExporter Jari Häkkinen Request major ZZ Other tickets not classified
#269 Update ftp server library version Nicklas Nordborg task major FTP Server v1.1 net.sf.basedb.ftp
#270 lev.thep.lu.se website down? Jari Häkkinen defect major not classified
#271 Update to MeV 4.6.1 Nicklas Nordborg task major MeV Launcher v1.7 net.sf.basedb.mev
#273 Bug in detection p-value Jari Häkkinen defect major Illumina package v1.5.1 net.sf.basedb.illumina
#274 Upgrading the Illumina package does not update the validator path fo BGX files Nicklas Nordborg defect major Illumina package v1.6 net.sf.basedb.illumina
#278 Plug-in should suggest better job names Nicklas Nordborg enhancement major Illumina package v1.7 net.sf.basedb.illumina
#279 Plug-in should suggest better job names Nicklas Nordborg enhancement major MeV Launcher v1.8 net.sf.basedb.mev
#280 Plug-in should suggest better job names Nicklas Nordborg enhancement major Normalization package v1.1 net.sf.basedb.normalizers
#281 Plug-in should suggest better job names Nicklas Nordborg enhancement major Example code v1.3 net.sf.basedb.examples.plugins
#282 Add example of an edit-dialog extension Nicklas Nordborg task major Example code v1.3 net.sf.basedb.examples.extensions
#287 Change "source" and "target" compilation options to 1.6 Nicklas Nordborg defect major Plugin examples v2.x net.sf.basedb.examples.plugins
#292 Check/create annotation types, etc. required by reggie Nicklas Nordborg task major Reggie v1.0 net.sf.basedb.reggie
#293 Remove workaround for for BASE ticket 1583 when 2.17.1 has been released Martin Svensson enhancement major Reggie v1.4 net.sf.basedb.reggie
#294 Require BASE 2.17.1 Martin Svensson task major Reggie v1.4 net.sf.basedb.reggie
#295 Configuration file for VirtualArray is missing a tab in 'desc' field Jari Häkkinen defect major VirtualArray 1.2 se.lu.onk series plug-ins
#299 Add field for PAD when no specimen tubes exists for a case Nicklas Nordborg enhancement major Reggie v1.1 net.sf.basedb.reggie
#300 Allow non-standard personal numbers Nicklas Nordborg enhancement major Reggie v1.1 net.sf.basedb.reggie
#302 Update functionality in the Personal information registration Nicklas Nordborg enhancement major Reggie v1.2 net.sf.basedb.reggie
#303 Automatic attachment of files to sample (Case) items Nicklas Nordborg Request major Reggie v1.2 net.sf.basedb.reggie
#304 Implement HDFS external file support Nicklas Nordborg task major HDFS package v1.0 net.sf.basedb.hdfs
#305 Create package for supporting external files on FTP servers Nicklas Nordborg task major External files support 1.0 net.sf.basedb.xfiles
#307 Consent form registration Nicklas Nordborg task major Reggie v1.3 net.sf.basedb.reggie
#308 Move common style definitions and javascript functions to separate files Nicklas Nordborg task major Reggie v1.3 net.sf.basedb.reggie
#309 Merge example plug-ins and extensions into one package Nicklas Nordborg task major Example code v1.3 net.sf.basedb.examples.extensions
#310 Update extension examples to BASE 3 Nicklas Nordborg task major Example code v1.3 net.sf.basedb.examples.extensions
#312 Updates required for BASE 3 support Martin Svensson task major MeV Launcher v1.8 net.sf.basedb.mev
#313 Updates required for BASE 3 support Martin Svensson task major FTP Server v1.2 net.sf.basedb.ftp
#316 Add support for 'YYYYMMDD' date format in the 'Consent form registration wizard' Martin Svensson enhancement major Reggie v1.4 net.sf.basedb.reggie
#317 Specimen tube registration wizard Martin Svensson task major Reggie v1.6 net.sf.basedb.reggie
#318 Remove references to lib copying in reggie README Martin Svensson defect major Reggie v1.5 net.sf.basedb.reggie
#319 Remove lib/reggie from trunk Martin Svensson defect major Reggie v1.5 net.sf.basedb.reggie
#321 reggie 1.4: Consentform cannot be registered if date is missing Jari Häkkinen defect major Reggie v1.5 net.sf.basedb.reggie
#322 Select multiple "not asked" sub-options Nicklas Nordborg Request major Reggie v1.5 net.sf.basedb.reggie
#323 Cannot save "Personal information registration" form if no "Sampling date" or "RNA Later date" is entered Nicklas Nordborg defect major Reggie v1.5 net.sf.basedb.reggie
#324 Problem registering a case for specimen tubes with children Nicklas Nordborg defect major Reggie v1.5 net.sf.basedb.reggie
#327 Update web service examples to BASE 3 Nicklas Nordborg task major Web services examples v3.0 net.sf.basedb.examples.webservices
#328 Switch to GPL3 Nicklas Nordborg task major MeV Launcher v1.8 net.sf.basedb.mev
#329 Set active project when using FTP Nicklas Nordborg task major FTP Server v1.2 net.sf.basedb.ftp
#330 Partition registration wizard Martin Svensson enhancement major Reggie v1.6 net.sf.basedb.reggie
#331 Updates required for BASE 3 Nicklas Nordborg task major Normalization package v1.1 net.sf.basedb.normalizers
#332 Update to FTP server lib 1.0.6 Nicklas Nordborg task major FTP Server v1.2 net.sf.basedb.ftp
#333 Update to MeV 4.7 Nicklas Nordborg task major MeV Launcher v1.8 net.sf.basedb.mev
#334 Use item subtypes - step 2 Nicklas Nordborg task major Reggie v2.1 net.sf.basedb.reggie
#336 Add bioplate test data Nicklas Nordborg task major Reggie v2.0 net.sf.basedb.reggie
#337 Specimen tube wizard: Automatically restart Martin Svensson enhancement major Reggie v2.1 net.sf.basedb.reggie
#338 Update Ajax2 to 1.6.1 Nicklas Nordborg task major Web services examples v3.1 net.sf.basedb.examples.webservices
#339 New entry: Report generator Martin Svensson enhancement major Reggie v2.1 net.sf.basedb.reggie
#341 Specimen tube registration wizard should check name format Martin Svensson enhancement major Reggie v2.1 net.sf.basedb.reggie
#342 reggie partition manager should not list deleted specimen tubes in 'Select specimen tubes' dialouge Nicklas Nordborg enhancement major Reggie v2.0.1 net.sf.basedb.reggie
#344 Exception when trying to register more than one specimen tube for a case Nicklas Nordborg defect major Reggie v2.0.2 net.sf.basedb.reggie
#345 Add header line to csv file that can be downloaded from the partition wizard Nicklas Nordborg enhancement major Reggie v2.1 net.sf.basedb.reggie
#346 Create virtual patient for cases with consent=no or not asked Nicklas Nordborg enhancement major Reggie v2.1 net.sf.basedb.reggie
#353 The No and Not asked biosources should have their own Types Nicklas Nordborg Request major Reggie v2.2 net.sf.basedb.reggie
#354 Changes related to new GUI in BASE 3.1 Nicklas Nordborg enhancement major Reggie v2.4 net.sf.basedb.reggie
#355 Partition wizard should use local storage to save form Nicklas Nordborg enhancement major Reggie v2.3 net.sf.basedb.reggie
#357 Some barcoded personal numbers is using 2-digit years instead of 4 Nicklas Nordborg enhancement major Reggie v2.3 net.sf.basedb.reggie
#358 Consent registration always create virtual patients 'No000001' and 'Not asked000001' Nicklas Nordborg defect major Reggie v2.3 net.sf.basedb.reggie
#360 Changes related to new GUI in BASE 3.1 Nicklas Nordborg enhancement major MeV Launcher v1.9 net.sf.basedb.mev
#362 Add 'install' target to ant build script Nicklas Nordborg task major MeV Launcher v1.9 net.sf.basedb.mev
#366 Import annotations and other information from Caliper output Nicklas Nordborg task major Reggie v2.4 net.sf.basedb.reggie
#367 Incorrect mapping of prefix index to site name Nicklas Nordborg defect major Reggie v2.4 net.sf.basedb.reggie
#368 Clearing the PAD field in the registration wizard should clear the PAD on specimen Nicklas Nordborg enhancement major Reggie v2.4 net.sf.basedb.reggie
#369 Update names for an existing patient Nicklas Nordborg enhancement major Reggie v2.4 net.sf.basedb.reggie
#372 Generate lab protocol for FFPE Nicklas Nordborg task major Reggie v2.7 net.sf.basedb.reggie
#373 Register HE glass and histology child items Nicklas Nordborg task major Reggie v2.7 net.sf.basedb.reggie
#374 Store operation date on case items Nicklas Nordborg enhancement major Reggie v2.4 net.sf.basedb.reggie
#375 Personal registration wizard should set creation date on specimen tubes Nicklas Nordborg defect major Reggie v2.4 net.sf.basedb.reggie
#376 Create some example extensions that add list columns Nicklas Nordborg task major Example code v1.5 net.sf.basedb.examplecode
#377 Create some example extensions for the item overview Nicklas Nordborg task major Example code v1.5 net.sf.basedb.examplecode
#380 Refactor annotation type handling in Reggie Nicklas Nordborg enhancement major Reggie v2.5 net.sf.basedb.reggie
#385 Export information needed by the tumor registry Nicklas Nordborg task major Reggie v2.6 net.sf.basedb.reggie
#389 The partition wizard should not allow missing weights in some cases Nicklas Nordborg enhancement major Reggie v2.6 net.sf.basedb.reggie
#390 Search for subtype and annotation type among proper main item type Nicklas Nordborg defect major Reggie v2.6 net.sf.basedb.reggie
#394 Change weight table order in Partition wizard Jari Häkkinen Request major Reggie v2.7 not classified
#395 Add 'laterality' column to the montly operation list export Nicklas Nordborg enhancement major Reggie v2.7 net.sf.basedb.reggie
#396 Use tab instead of comma as column separator for the monthly operation list export Nicklas Nordborg enhancement major Reggie v2.7 net.sf.basedb.reggie
#397 Add option to export item subtype in the monthly operation list Nicklas Nordborg enhancement major Reggie v2.7 net.sf.basedb.reggie
#398 Add option to export the monthly operation list for a full year Nicklas Nordborg enhancement major Reggie v2.7 net.sf.basedb.reggie
#399 Registration wizard should store laterality on NoSpecimen items Nicklas Nordborg enhancement major Reggie v2.7 net.sf.basedb.reggie
#400 Update NoSpecimen items with values for laterality Jari Häkkinen task major Reggie v2.7 net.sf.basedb.reggie
#401 Add 'case' column to the montly operation list export Nicklas Nordborg enhancement major Reggie v2.7 net.sf.basedb.reggie
#402 Default protocol selection Nicklas Nordborg enhancement major Reggie v2.7 net.sf.basedb.reggie
#403 NullPointerException when using the TDMS exporter Nicklas Nordborg defect major MeV Launcher 1.10 net.sf.basedb.mev
#404 Record if more than one piece has been used for Allprep Nicklas Nordborg task major Reggie v2.7 net.sf.basedb.reggie
#406 Update to MeV 4.8 Nicklas Nordborg task major MeV Launcher 1.10 net.sf.basedb.mev
#408 Caliper importer should import NA values as -100 Nicklas Nordborg enhancement major Reggie v2.7 net.sf.basedb.reggie
#410 Create an example extensions for logging Nicklas Nordborg task major Example code v1.5 net.sf.basedb.examplecode
#414 The NanoDrop import wizard doesn't accept '0' values Nicklas Nordborg defect major Reggie v2.8 net.sf.basedb.reggie
#416 Check consent before exporting "monthly operation list" Nicklas Nordborg enhancement major Reggie v2.8 net.sf.basedb.reggie
#417 Enable core biopsy 'C' suffix for all sites Nicklas Nordborg enhancement major Reggie v2.9 net.sf.basedb.reggie
#419 Allow user to select resolution in sample count report olle enhancement major Reggie v2.9 net.sf.basedb.reggie
#420 Sample count report should have two columns for summed data olle enhancement major Reggie v2.9 net.sf.basedb.reggie
#421 Sample count report does not always handle all views correctly olle defect major Reggie v2.9 net.sf.basedb.reggie
#425 Generate a lab protocol for RNA -> cDNA processing Nicklas Nordborg task major Reggie v2.12 net.sf.basedb.reggie
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