Opened 12 years ago

Closed 10 years ago

#113 closed enhancement (fixed)

Add support for more variations of Illumina detection P-value calculations

Reported by: Jari Häkkinen Owned by: Jari Häkkinen
Priority: major Milestone: Illumina package v1.4
Component: net.sf.basedb.illumina Keywords:
Cc:

Description (last modified by Jari Häkkinen)

The methods used by BeadStudio is described in the BeadStudio Gene Expression Module (GX)

The whole genome beadchips use one algorithm whereas DASL, miRNA, VeraCode DASL, and Focused Arrays all use another algorithm.

Currently, the plug-in features only the WG version.

Change History (7)

comment:1 Changed 12 years ago by Jari Häkkinen

Milestone: Illumina package v1.x

comment:2 Changed 11 years ago by Jari Häkkinen

Description: modified (diff)
Milestone: Illumina package v1.xIllumina package v1.4
Owner: changed from Nicklas Nordborg to Jari Häkkinen
Status: newassigned
Summary: Add support for Illumina focused arrays in Illumina detection P-value plug-inAdd support for more variation of Illumina detection P-value caluclations plug-in

comment:3 Changed 11 years ago by Jari Häkkinen

Summary: Add support for more variation of Illumina detection P-value caluclations plug-inAdd support for more variations of Illumina detection P-value caluclations

comment:4 Changed 11 years ago by Jari Häkkinen

(In [1114]) Addresses #113. The Pvalue calculation is in place. Need to figure details of std and average calculations.

comment:5 Changed 11 years ago by Jari Häkkinen

Summary: Add support for more variations of Illumina detection P-value caluclationsAdd support for more variations of Illumina detection P-value calculations

comment:6 Changed 10 years ago by Jari Häkkinen

Description: modified (diff)

comment:7 Changed 10 years ago by Jari Häkkinen

Resolution: fixed
Status: assignedclosed

(In [1167]) Fixes #113. The code change in changeset:1114 is valid, fixed docs.

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