Opened 12 years ago

Closed 12 years ago

#195 closed enhancement (fixed)

net.sf.basedb.normalizers: Normalizers should ask user for how to calculate averages

Reported by: Jari Häkkinen Owned by: Martin Svensson
Priority: major Milestone: Normalization package v1.1
Component: net.sf.basedb.normalizers Keywords:
Cc:

Description

The Average Normalization plug-in always use the geometric mean but this assumes that data is not logged before normalization. However, for logged intensities arithmetic mean makes more sense.

Related to http://base.thep.lu.se/ticket/1120

Change History (6)

comment:1 Changed 12 years ago by Martin Svensson

Status: newassigned

comment:2 Changed 12 years ago by Martin Svensson

Resolution: fixed
Status: assignedclosed

(In [1060]) Fixes #195 Normalizers should ask user for how to calculate averages

comment:3 Changed 12 years ago by Martin Svensson

Resolution: fixed
Status: closedreopened

BASE 2.12 is required.
Build.xml, base-plugins.xml and requirement-info in documentation should be updated.

comment:4 in reply to:  3 Changed 12 years ago by Jari Häkkinen

Replying to martin:

BASE 2.12 is required.
Build.xml, base-plugins.xml and requirement-info in documentation should be updated.

wiki too.

comment:5 Changed 12 years ago by Martin Svensson

(In [1084]) References #195 Updates everything except documentation/wiki, cause current links on the web go to the trunk. Updating them needs to wait until it's time for next release (version 1.1). Also updated the svn-ignore property for some directories/files, mostely of the ignored files are generated by the c++ part of this package.

comment:6 Changed 12 years ago by Martin Svensson

Resolution: fixed
Status: reopenedclosed

(In [1087]) Fixes #195 net.sf.basedb.normalizers: Normalizers should ask user for how to calculate averages

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