Opened 12 years ago

Closed 12 years ago

Last modified 12 years ago

#206 closed enhancement (fixed)

net.sf.basedb.normalizers: Make qQuantileNormalization handle missing values

Reported by: Jari Häkkinen Owned by: Jari Häkkinen
Priority: major Milestone: Normalization package v1.1
Component: net.sf.basedb.normalizers Keywords:
Cc:

Description


Change History (6)

comment:1 Changed 12 years ago by Jari Häkkinen

Status: newassigned

comment:2 Changed 12 years ago by Jari Häkkinen

Summary: net.sf.basedb.normalizers: Make qQuantileNormalization hanlde missing valuesnet.sf.basedb.normalizers: Make qQuantileNormalization handle missing values

comment:3 Changed 12 years ago by Jari Häkkinen

(In [1043]) Addresses #118 and #206. This code produces the same result as the preivous code but fails miserably with missing values.

comment:4 Changed 12 years ago by Jari Häkkinen

(In [1044]) Addresses #118 and #206. If no assay data is given use the average of all assays as reference ... fixed create_target for this case.

comment:5 Changed 12 years ago by Jari Häkkinen

Resolution: fixed
Status: assignedclosed

(In [1047]) Fixes #206. Missing values in reference now works. Each probe with no welldefined value in the reference are ignored.

comment:6 Changed 12 years ago by Jari Häkkinen

(In [1049]) Addresses #206. Last commit destroyed nan fixing in changeset:1045 for some cases of reference selection, the nan fix is now restored.

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