Opened 10 years ago

Closed 10 years ago

Last modified 10 years ago

#257 closed task (fixed)

Fix issues with the BGX reporter importer due to changes in the core api of BASE 2.15

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: blocker Milestone: Illumina package v1.5
Component: net.sf.basedb.illumina Keywords:
Cc:

Description

The core reporter importer plug-in will get support for running without a configuration. This affects the BGX reporter importer since it is a subclass of the core importer. The main issue is that we need to override the regular expressions when parsing the [Controls] section. This is currently done by changing the plug-in configuration. This will no longer work if the parameters are part of the job. See http://base.thep.lu.se/ticket/1446 for more information.

Change History (3)

comment:1 Changed 10 years ago by Nicklas Nordborg

Status: newassigned

comment:2 Changed 10 years ago by Nicklas Nordborg

Resolution: fixed
Status: assignedclosed

(In [1187]) Fixes #257: Fix issues with the BGX reporter importer due to changes in the core api of BASE 2.15

comment:3 Changed 10 years ago by Nicklas Nordborg

(In [1189]) References #257: Fix issues with the BGX reporter importer due to changes in the core api of BASE 2.15

The package now requires BASE 2.15.

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