Opened 9 years ago

Closed 9 years ago

Last modified 9 years ago

#265 closed task (fixed)

Investigate and fix issues with external files introduced in BASE 2.16

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: critical Milestone: Illumina package v1.6
Component: net.sf.basedb.illumina Keywords:
Cc:

Description

BASE 2.16 adds support for file items that are stored externally. See http://base.thep.lu.se/ticket/1485

We need to investigate how this affects the Illumina plug-ins and fix issues that we find. Some import plug-ins probably use the file size but this may not be known for external files.

Change History (2)

comment:1 Changed 9 years ago by Nicklas Nordborg

Resolution: fixed
Status: newclosed

(In [1226]) Fixes #265: Investigate and fix issues with external files introduced in BASE 2.16

There was a check that BGX and SNP files had location=Location.PRIMARY and throwed an exception if not. It now checks isDownloadable() instead. There was also a progress reporting issue in the BeadSummaryImporter? for files with unknown size.

comment:2 Changed 9 years ago by Nicklas Nordborg

Milestone: Illumina package v1.xIllumina package v1.6
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