Opened 7 years ago

Closed 6 years ago

Last modified 6 years ago

#456 closed task (fixed)

Barcode layout wizard

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: critical Milestone: Reggie v2.12
Component: net.sf.basedb.reggie Keywords:
Cc:

Description (last modified by Nicklas Nordborg)

This is the firstwizard in the cDNA to Library processing group of wizards (see #423).

The wizard is used once the cDNA plate has been registered as completed. The wizard should be used to assign barcodes to each sample on the bioplate. A default layout will be available. The wizard should create child extracts (library) and a bioplate (library) without creation date.

Change History (13)

comment:1 Changed 7 years ago by Nicklas Nordborg

Description: modified (diff)

comment:2 Changed 7 years ago by Nicklas Nordborg

Status: newassigned
Summary: Start cDNA->Library processingBarcode layout wizard

comment:3 Changed 7 years ago by Nicklas Nordborg

(In [1806]) References #456: Barcode layout wizard

Started with the barcode layout wizard. We need to support more alternate barcoding schemes than we first thought. This should also be reflected in the original RNA selection wizard. Primarily as a visual guideline but the choice made there should be remembered and used by the barcode layout wizard. The barcode layout wizard should have support for selecting a different scheme or manual modifications.

comment:4 Changed 7 years ago by Nicklas Nordborg

(In [1809]) References #424, #425 and #456. Restructure the plate-handling javascript so that it is easier to re-use on different pages.

The barcode wizard now display the intended barcodes, but it is still only visual and there is not yet possible to change or save the information.

comment:5 Changed 7 years ago by Nicklas Nordborg

(In [1810]) References #456: Barcode layout wizard

The wizard now use the real barcode objects and it can use the pre-defined layouts. Added checks for missing barcodes. Registration is allowed to proceed if all cDNA items has barcodes and library items are created. Support for manually setting barcodes has yet to be implemented.

comment:6 Changed 7 years ago by Nicklas Nordborg

(In [1811]) References #456: Barcode layout wizard

Adding file that should have been part of [1810].

comment:7 Changed 7 years ago by Nicklas Nordborg

(In [1814]) References #456 and #457. Added support for manually setting barcodes. Check for duplicate barcodes in the same pool. Added list- and plate-view protocols for library preparation.

comment:8 Changed 7 years ago by Nicklas Nordborg

Milestone: Reggie v2.xReggie v2.12

comment:9 Changed 6 years ago by Nicklas Nordborg

(In [1893]) References #456: Barcode layout wizard

Use missing BARCODE_VARIANT annotation to find cDNA plates for the barcode layout wizard (instead of checking for child library extracts).

Create child library bioplate and place the library extracts using the regular scheme (eg. without creation date).

comment:10 Changed 6 years ago by Nicklas Nordborg

Description: modified (diff)

comment:11 Changed 6 years ago by Nicklas Nordborg

(In [1932]) References #456: Barcode layout wizard

Some minor improvements regarding usability.

  • Show comments from the cDNA plate when selecting it
  • Add comments to the Library plate that show up in the lab protocols
  • Show 'Please wait...' animation when loading and saving information

comment:12 Changed 6 years ago by Nicklas Nordborg

Resolution: fixed
Status: assignedclosed

comment:13 Changed 6 years ago by Nicklas Nordborg

(In [1971]) References #456: Barcode layout wizard

Hide first section when moving to the second step.

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