Opened 12 years ago

Closed 12 years ago

Last modified 12 years ago

#90 closed task (fixed)

Create array design from a bgx-file

Reported by: Nicklas Nordborg Owned by: Martin Svensson
Priority: critical Milestone: Illumina package v1.0
Component: net.sf.basedb.illumina Keywords:
Cc:

Description (last modified by Martin Svensson)

A bgx file contains array design information for Illumina arrays. The file is a gzip-compressed text file. The file also contains reporter annotations. The information we have so far is:

  • The Probe_Id column should be used as the reporter id.
  • The Array_Address_Id column is the Feature ID. This is the ID that is present in the raw data files. Thus, the array designs must use the FEATURE_ID as the feature identification method.

NOTE! The bgx file has two sections: [Probes] and [Controls]. Data from both sections should be imported.

Import of Reporter annotations is in a separate ticket see ticket#94

Change History (8)

comment:1 Changed 12 years ago by Johan Enell

Milestone: Illumina package v1.0

comment:2 Changed 12 years ago by Martin Svensson

Owner: changed from Johan Enell to Martin Svensson
Status: newassigned

comment:3 Changed 12 years ago by Martin Svensson

(In [561]) References #90 The plug-in can now be used to import features to an array design.

comment:4 Changed 12 years ago by Martin Svensson

(In [563]) References #90 Refine comments and removed some blank lines.

comment:5 Changed 12 years ago by Martin Svensson

(In [565]) References #90 Added a default plugin configuration to come along with the jar-file and set the auto-installer to know there is configurations to install.

comment:6 Changed 12 years ago by Martin Svensson

Description: modified (diff)

comment:7 Changed 12 years ago by Martin Svensson

Resolution: fixed
Status: assignedclosed

(In [578]) Fixes #90 Create array design from a bgx-file.

comment:8 Changed 12 years ago by Nicklas Nordborg

(In [581]) References #90: Create array design from a bgx-file

Fixed missing spaces in about text.

Note: See TracTickets for help on using tickets.