Opened 12 years ago

Closed 12 years ago

Last modified 12 years ago

#94 closed task (fixed)

Import reporter annotations from bgx files

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: major Milestone: Illumina package v1.0
Component: net.sf.basedb.illumina Keywords:
Cc:

Description

See also #90. We probably need a different plug-in for the reporter annotations. The column mappings should be configurable in the same way as the core reporter importer. A default configuration for the column mappings can probably be provided at installation time. The division into two sections may pose a problem. The current GUI for setting configurations doesn't support this, even though the backend code does.

Change History (6)

comment:1 Changed 12 years ago by Nicklas Nordborg

Owner: changed from Johan Enell to Nicklas Nordborg
Status: newassigned

comment:2 Changed 12 years ago by Nicklas Nordborg

(In [556]) References #94: Import reporter annotations from bgx files

First version of the importer. Need better code for handling the multiple sections.

comment:3 Changed 12 years ago by Nicklas Nordborg

(In [559]) References #94: Import reporter annotations from bgx files

The [Controls] section is now handled better. The configuration parameters are still hardcoded into the class.

comment:4 Changed 12 years ago by Nicklas Nordborg

(In [586]) References #94: Import reporter annotations from bgx files

Added functionality to merge duplicate probes in the controls section.

comment:5 Changed 12 years ago by Nicklas Nordborg

Resolution: fixed
Status: assignedclosed

comment:6 Changed 12 years ago by Nicklas Nordborg

(In [630]) References #94: Import reporter annotations from bgx files

Added description of plug-in.

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