Timeline



Dec 21, 2007:

1:27 PM Changeset [525] by mbayer
- basic Affy support implemented - next steps required now: mappings …

Dec 20, 2007:

6:14 PM Changeset [524] by mbayer
have made more changes to the UI to satisfy IE requirements also fixed …

Dec 19, 2007:

1:56 PM Changeset [523] by mbayer
some more tweaks to the interface, mostly for making it work with IE

Dec 14, 2007:

6:07 PM Changeset [522] by mbayer
made a number of tweaks to the interface

Dec 13, 2007:

5:47 PM Changeset [521] by mbayer
some minor bug fixes
4:02 PM Changeset [520] by mbayer
added two missing files
3:41 PM Changeset [519] by mbayer
- got first import with test data to work (genepix) from beginning to …
2:29 PM GCRMAPlugin.zip attached to nl.unimaas.bigcat.GCRMA by Johan Enell
2:29 PM nl.unimaas.bigcat.GCRMA created by Johan Enell
1:39 PM PluginDownload edited by Johan Enell
Added GCRMA (diff)

Dec 12, 2007:

12:19 PM Changeset [518] by mbayer
integration of generated tab2mage file with the rest of the code is …

Dec 7, 2007:

5:16 PM Changeset [517] by mbayer
writer now also writes hybs section out but still needs to be …
3:06 PM Changeset [516] by mbayer
first two sections of tab2mage file now get generated ok
11:56 AM Changeset [515] by mbayer
problem with file writing fixed - file is now actually written to …

Dec 6, 2007:

1:09 PM Changeset [514] by mbayer
added missing class
1:04 PM Changeset [513] by mbayer
have implemented a skeleton writer class which writes a dummy tab2mage file

Dec 5, 2007:

11:13 AM Ticket #20 (extra values pass through) closed by Jari Häkkinen
duplicate: Moved to ticket:88 due to spam.
11:12 AM Ticket #88 (extra values pass through) created by Jari Häkkinen
Extravalues(_xc_) should be passed through to the next bioassayset. …
11:12 AM Ticket #18 (AnnotationFiletr) closed by Jari Häkkinen
duplicate: Moved to ticket:87 due to spam.
11:11 AM Ticket #87 (AnnotationFilter (se.lu.onk.AnnotationFilter)) created by Jari Häkkinen
AnnotationFilter cannot split the parameter "Annotation Values"
11:11 AM Ticket #16 (BasicReporter and BasicSpot) closed by Jari Häkkinen
duplicate: Moved to ticket:86 due to spam.
11:10 AM Ticket #86 (BasicReporter and BasicSpot (se.lu.onk.BaseFile)) created by Jari Häkkinen
the classes BasicReporter and BasicSpot should be added to BaseFile …
11:10 AM Ticket #11 (Pinbaes normalization) closed by Jari Häkkinen
duplicate: Moved to ticket:85 due to spam.
11:09 AM Ticket #85 (Pinbased normalization for VirtualArray data) created by Jari Häkkinen
Pinbased normalization shoul be able to handle data where block is …
11:09 AM Ticket #10 (ReplicateError) closed by Jari Häkkinen
duplicate: Moved to ticket:84 due to spam.
11:08 AM Ticket #84 (Change parameter in ReplicateError (se.lu.onk.ReplicateError)) created by Jari Häkkinen
Add value 'unlimited' to paremter sd limit.
11:08 AM Ticket #9 (Error in ReplicateError) closed by Jari Häkkinen
duplicate: Moved to ticket:83 due to spam.
11:07 AM Ticket #83 (ReplicateError: Error in ReplicateError) created by Jari Häkkinen
When running on a dataset with triplicate the result table is created …
11:06 AM Ticket #8 (COPA) closed by Jari Häkkinen
duplicate: Moved to ticket:82 due to spam.
11:05 AM Ticket #82 (COPA) created by Jari Häkkinen
A plug-in for the COPA analysis.
11:04 AM Ticket #7 (Merge on genesymbol) closed by Jari Häkkinen
duplicate
11:04 AM Ticket #6 (QQPlot) closed by Jari Häkkinen
duplicate
11:03 AM Ticket #5 (Center on assay) closed by Jari Häkkinen
duplicate
11:03 AM Ticket #4 (Spike Lowess) closed by Jari Häkkinen
duplicate
11:00 AM Ticket #81 (Merge on genesymbol) created by Jari Häkkinen
Merge on genesymbol. Some reporters have a list of genesymbols …
10:59 AM Ticket #80 (QQPlot) created by Jari Häkkinen
Draw a qqplot for each assay and describe everyting in a htmlfile Use …
10:58 AM Ticket #79 (Center on assay (se.lu.onk.Center)) created by Jari Häkkinen
Add function on median/mean center. Center on assay. Group assays to …
10:56 AM Ticket #78 (Spike Lowess (se.lu.onk.lowess)) created by Jari Häkkinen
Add the possibility to do spike normalization with lowess. Add a …

Dec 4, 2007:

3:46 PM Changeset [512] by mbayer
- have tied the interface to the importer plugin class now -- all …

Dec 3, 2007:

5:14 PM Changeset [511] by mbayer
- have tidied up the interface to the point where it is usable as it …

Nov 30, 2007:

12:00 PM Changeset [510] by mbayer
added html files for easier design of the interface -- these won't …

Nov 28, 2007:

6:11 PM Changeset [509] by dominic
updated changelog file
6:11 PM Changeset [508] by dominic
updated changelog file
6:10 PM Changeset [507] by dominic
updated changelog file
6:10 PM uk.ac.ebi.AnnotationTypeCvImporter edited by basepluginswiki
(diff)
6:08 PM uk.ac.ebi.AffyArrayDesignBatchImporter edited by basepluginswiki
(diff)
6:04 PM Changeset [506] by dominic
updated changelog file
6:04 PM Changeset [505] by dominic
updated chagelog file
5:59 PM Changeset [504] by dominic
updated read me file
5:59 PM Changeset [503] by dominic
updated read me anmd jar files
5:50 PM uk.ac.ebi.Tab2MageExporter edited by basepluginswiki
(diff)
5:48 PM uk.ac.ebi.Tab2MageImporter edited by basepluginswiki
(diff)
5:41 PM Changeset [502] by dominic
updated read me text file
5:40 PM Changeset [501] by dominic
updated read me text file
5:37 PM Changeset [500] by dominic
updated read me text file
5:24 PM Changeset [499] by mbayer
added missing jar files for compilation so that project is self-contained
5:17 PM uk.ac.ebi.Tab2MageImporter edited by basepluginswiki
(diff)
5:14 PM Changeset [498] by dominic
updated pooling text file
5:13 PM Changeset [497] by mbayer
- various specification related documents added (from Philippe) - have …
5:12 PM Changeset [496] by dominic
updated read me file
5:11 PM uk.ac.ebi.Tab2MageImporter edited by basepluginswiki
(diff)
5:08 PM uk.ac.ebi.Tab2MageImporter edited by basepluginswiki
(diff)
5:08 PM Changeset [495] by dominic
updated ebi-plugins-utils jar file
5:07 PM Changeset [494] by dominic
added Tab2Mage Importer version 2
5:04 PM Changeset [493] by dominic
added ebi-utils jar file
5:03 PM Changeset [492] by dominic
updated read me files
5:03 PM Changeset [491] by dominic
adding read me files
5:03 PM Changeset [490] by dominic
updated exporter read me and tab2mage exporter jar file
5:02 PM Changeset [489] by dominic
latest atcv importer
12:37 PM uk.ac.ebi.Tab2MageImporter edited by basepluginswiki
(diff)
12:37 PM uk.ac.ebi.Tab2MageImporter edited by basepluginswiki
(diff)
12:35 PM uk.ac.ebi.Tab2MageImporter edited by basepluginswiki
(diff)
12:35 PM uk.ac.ebi.Tab2MageImporter edited by basepluginswiki
(diff)
12:32 PM uk.ac.ebi.Tab2MageImporter edited by basepluginswiki
(diff)
12:30 PM uk.ac.ebi.Tab2MageImporter edited by basepluginswiki
(diff)
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