Timeline



Feb 8, 2008:

2:52 PM Ticket #98 (Implement validator and metadata extractor plug-in for BGX files) closed by Martin Svensson
fixed: (In [579]) Fixes #98 Implement validator and metadata extractor …
2:52 PM Changeset [579] by Martin Svensson
Fixes #98 Implement validator and metadata extractor plug-in for BGX files
2:21 PM Changeset [578] by Martin Svensson
Fixes #90 Create array design from a bgx-file.
2:21 PM Ticket #90 (Create array design from a bgx-file) closed by Martin Svensson
fixed: (In [578]) Fixes #90 Create array design from a bgx-file.
1:33 PM Changeset [577] by Martin Svensson
References #89 Installation plug-in is now able to create Illumina …

Feb 7, 2008:

4:43 PM Changeset [576] by Martin Svensson
References #89 Changed to wiki format and configured some svn properties
2:19 PM Changeset [575] by Martin Svensson
Reference #94 Added more extended properties for Illumina reporters …
10:14 AM Ticket #99 (The tagging system of the repository should be changed) created by Jari Häkkinen
Jari has the details in his head, contact him on this issue.
9:54 AM Changeset [574] by Jari Häkkinen
Added information on how to resolve missing probe set situations.

Feb 6, 2008:

4:47 PM Changeset [573] by Martin Svensson
References #89 Added extended properties to be used with Illumina in BASE.
3:46 PM Changeset [572] by Martin Svensson
References #89 Change names, ids and variables according to …
11:28 AM Changeset [571] by Martin Svensson
References #89 Updated svn-properties for README file
11:22 AM Changeset [570] by Martin Svensson
References #89 Inserted the readme-text in wiki format.

Feb 5, 2008:

8:40 PM net.sf.basedb.illumina edited by markus
(diff)
5:13 PM se.lu.thep.affymetrix edited by Jari Häkkinen
APT plug-in location changed. (diff)
5:11 PM PluginDownload edited by Jari Häkkinen
APT plug-in location changed. (diff)
4:51 PM Changeset [569] by Martin Svensson
References #98 The validator and meta data reader is done. The …
12:27 PM Changeset [568] by Nicklas Nordborg
References #91: Import Illumina scandata files as raw data Call …

Feb 1, 2008:

4:45 PM Changeset [567] by Martin Svensson
References #98 A start of a BGX validator/metadatareader.
10:59 AM Changeset [566] by Nicklas Nordborg
References #89: Installation program and documentation Added rest of …

Jan 31, 2008:

4:48 PM Changeset [565] by Martin Svensson
References #90 Added a default plugin configuration to come along with …
3:01 PM Changeset [564] by Nicklas Nordborg
References #91: Import Illumina scandata files as raw data Error …
9:14 AM Ticket #98 (Implement validator and metadata extractor plug-in for BGX files) created by Nicklas Nordborg
It should simply check the [Heading] section in the beginning of the …

Jan 30, 2008:

2:51 PM Changeset [563] by Martin Svensson
References #90 Refine comments and removed some blank lines.
2:46 PM Changeset [562] by Nicklas Nordborg
References #91: Import Illumina scandata files as raw data The …
2:29 PM Changeset [561] by Martin Svensson
References #90 The plug-in can now be used to import features to an …

Jan 29, 2008:

2:53 PM Changeset [560] by Nicklas Nordborg
References #91: Import Illumina scandata files as raw data A skeleton …
8:51 AM Changeset [559] by Nicklas Nordborg
References #94: Import reporter annotations from bgx files The …

Jan 28, 2008:

4:31 PM Changeset [558] by mbayer
have fixed several bugs after testing whole imports, notably a problem …
2:03 PM Changeset [557] by Nicklas Nordborg
References #89: Installation program and documentation Documented the …
1:58 PM Changeset [556] by Nicklas Nordborg
References #94: Import reporter annotations from bgx files First …
11:48 AM Changeset [555] by Martin Svensson
References #89 Added more property checks when an item already exists …

Jan 26, 2008:

12:22 AM Ticket #97 (Remove Plier support from se.lu.thep.affymetrix) created by Jari Häkkinen
The Plier algorithm is a part of the …
12:16 AM Ticket #73 (Plier fails to import data) closed by Jari Häkkinen
wontfix: The APT

Jan 25, 2008:

11:35 PM Ticket #96 (Make the se.lu.thep.affymetrix plug-in compatible with the ...) created by Jari Häkkinen
10:39 PM PluginDownload edited by Jari Häkkinen
Added APT plug-in. (diff)
10:39 PM se.lu.thep.affymetrix edited by Jari Häkkinen
Added note about the APT plug-in (superseeds Plier) (diff)
10:24 PM PluginDownload edited by Jari Häkkinen
Clarifying plugin compatibility statement. (diff)
4:38 PM Changeset [554] by Martin Svensson
References #89 Illumina items are now created by the installation …
2:47 PM Ticket #95 (Intensity calculator for Illumina expression data) created by Nicklas Nordborg
The regular intensity calculator can be used but only for copying the …
2:39 PM Ticket #94 (Import reporter annotations from bgx files) created by Nicklas Nordborg
See also #90. We probably need a different plug-in for the reporter …
2:34 PM Ticket #92 (Create Illumina SNP raw data type) closed by Nicklas Nordborg
duplicate: Part of ticket #89
2:25 PM Changeset [553] by Nicklas Nordborg
References #89: Installation program and documentation Added INSTALL file

Jan 24, 2008:

5:41 PM Changeset [552] by mbayer
have added input validation (mandatory fields check) added back …
4:52 PM Changeset [551] by Martin Svensson
References #89 Start to insert illumina items with the installation plug-in

Jan 23, 2008:

3:21 PM Changeset [550] by mbayer
have restructured the code completely that writes the hybs section

Jan 22, 2008:

2:41 PM Changeset [549] by Nicklas Nordborg
References #89: Installation program and documentation Updated …
11:01 AM Ticket #93 (Illumina SNP validator and meta-data extractor) created by Martin Svensson
The data files should be validated automatically and some data such as …
10:55 AM Ticket #92 (Create Illumina SNP raw data type) created by Martin Svensson
Needed for SNP data from the Illumina platform. The raw files are to …
10:44 AM Ticket #91 (Import Illumina Bead Summary(IBS) files as raw data) created by Nicklas Nordborg
The rawest form of raw data generated by the Illumina scanner are the …
10:42 AM Changeset [548] by mbayer
new page added to gather additional info needed for autogeneration of …
10:36 AM Ticket #90 (Create array design from a bgx-file) created by Nicklas Nordborg
A bgx file contains array design information for Illumina arrays. The …
10:27 AM Ticket #89 (Installation program and documentation) created by Nicklas Nordborg
Create an installation program with documentation. The installation …
8:40 AM net.sf.basedb.illumina created by Nicklas Nordborg
Created front page for the Illumina plug-ins package

Jan 21, 2008:

11:25 AM Changeset [547] by mbayer
number of issues fixed in UI

Jan 18, 2008:

3:12 PM Changeset [546] by Nicklas Nordborg
Initial project structure is now in place.
11:27 AM Changeset [545] by mbayer
fixed bug in the submission of experiments that provide their own …
10:11 AM Changeset [544] by mbayer
submission with existing tab2mage file implemented

Jan 17, 2008:

12:51 PM Changeset [543] by mbayer
submit mechanism has been changed to interactive -- submit.jsp now …
12:20 PM Changeset [542] by Nicklas Nordborg
Adding root folder for example code (plug-ins and webservices client)
12:19 PM Changeset [541] by Nicklas Nordborg
Adding root folder for the Illumina plug-ins project

Jan 16, 2008:

1:12 PM Changeset [540] by mbayer
changed code so that users can either run the wizard or import data …
11:21 AM Changeset [539] by mbayer
forgot to add new files -- now added
9:12 AM Changeset [538] by gregory
9:11 AM Changeset [537] by gregory
9:11 AM Changeset [536] by gregory
9:11 AM Changeset [535] by gregory
9:10 AM Changeset [534] by gregory
9:10 AM Changeset [533] by gregory

Jan 15, 2008:

5:35 PM Changeset [532] by mbayer
-major expansion of system to allow for different use cases - now …

Jan 14, 2008:

4:09 PM se.lu.onk.BAFsegmentation created by markus
4:09 PM PluginDownload edited by markus
(diff)
4:08 PM PluginDownload edited by markus
(diff)
4:03 PM PluginDownload edited by markus
(diff)
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