Changes between Version 46 and Version 47 of PluginDownload


Ignore:
Timestamp:
Jan 25, 2008, 10:39:37 PM (13 years ago)
Author:
Jari Häkkinen
Comment:

Added APT plug-in.

Legend:

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  • PluginDownload

    v46 v47  
    1414 ''Normalization''::
    1515   [wiki:se.lu.thep.affymetrix Affymetrix plug-in for BASE]: Affymetrix normalization with RMAExpress or Plier
    16     ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.thep.affymetrix/base_affymetrix_plugin-0.7.tar.gz?format=raw download latest] [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.thep.affymetrix/base_affymetrix_plugin-0.7.tar.gz.MD5?format=raw MD5]). Works with BASE '''2.0 and later'''
     16    ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.thep.affymetrix/base_affymetrix_plugin-0.7.tar.gz?format=raw download latest] [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.thep.affymetrix/base_affymetrix_plugin-0.7.tar.gz.MD5?format=raw MD5]).  The Plier algorithm in this plug-in is superseeded by the [http://madr.lcb.uu.se/browser/plugins/se/uu/lcb/APT/tags/0.2 APT] plug-in. Works with BASE '''2.0 and later''' [[br]]
     17   [http://madr.lcb.uu.se/browser/plugins/se/uu/lcb/APT/tags/0.2 APT]: Affymetrix Power Tools execution plug-in. Currently apt-probeset-summarize and apt-probeset-geneotype from APT is acccessible through this plug-in. Works with BASE '''2.4 and later'''
    1718 ''Filter''::
    1819 ''Analysis''::
     
    2526   [wiki:uk.ac.ebi.AnnotationTypeCvImporter AnnotationTypeCvImporter]: Import annotation type annd controlled vocabularies from a simple flat file into base 2. Works with BASE '''2.0 and later'''[[BR]]
    2627   [wiki:nl.unimaas.bigcat.GCRMA GCRMA]:  Works with BASE '''2.0 and later'''[[BR]]
    27    [wiki:se.lu.onk.BAFsegmentation BAFsegmentation]: Segments B allele frequencies from SNP arrays to identify regions of allelic imbalance.
     28   [wiki:se.lu.onk.BAFsegmentation BAFsegmentation]: Segments B allele frequencies from SNP arrays to identify regions of allelic imbalance. '''Not released yet'''
    2829
    2930== BASE 1.2 plug-ins ==