Changes between Version 4 and Version 5 of net.sf.basedb.reggie/notes415


Ignore:
Timestamp:
Feb 22, 2018, 9:37:40 AM (10 months ago)
Author:
nicklas
Comment:

More details about deleting alignments

Legend:

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  • net.sf.basedb.reggie/notes415

    v4 v5  
    2424=== Remove existing Hisat alignments ===
    2525
    26 Use the '''Delete unmasked Hisat alignments''' wizard to delete existing Hisat alignments. There is no masking step before the alignment, and the genotyping is done with a shorter list (51) SNPs. Do not attempt to run the '''Genotype quality control''' wizard before the old alignments have been removed since this may lead to unpredictable results.
     26Use the '''Delete unmasked Hisat alignments''' wizard to delete existing Hisat alignments and files (in the BASE filesystem) that are related to them. There is no masking step before the alignment, and the genotyping is done with a shorter list (51) SNPs.
     27
     28Use the '''Stray files wizard''' to delete files from the file server.
     29
     30Do not attempt to run the '''Genotype quality control''' wizard before the old alignments have been removed since this may lead to unpredictable results.
    2731
    2832=== The QC_GenoTypeHET annotation type is no longer used ===