Changes between Version 4 and Version 5 of WikiStart


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Timestamp:
Dec 10, 2008, 12:07:27 PM (9 years ago)
Author:
henrik
Comment:

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  • WikiStart

    v4 v5  
    2222= COSTANZA, [CO]nfocal [ST]ack [AN]aly[Z]er [A]pplication =
    2323
     24Authors:[[BR]]
     25  Michael Green, Pawel Krupinski, Pontus Melke, Patrik Sahlin, Henrik Jönsson, Computational Biology & Biological Physics, Lund University[[BR]]
     26[[BR]]History:[[BR]]
     27  2008/01/28: first version[[BR]]
     28  2008/12/11: 1.0[[BR]]
     29[[BR]]Source:[[BR]]
     30  Available upon request (henrik at thep.lu.se).[[BR]]
     31[[BR]]Installation:[[BR]]
     32  Download and extract http://www.thep.lu.se/~henrik/costanza/download/Costanza.zip to the plugins folder, or subfolder, restart ImageJ, and there will be a new "Costanza" directory in the Plugins menu or submenu.[[BR]]
     33[[BR]]Requires:[[BR]]
     34  ImageJ 1.38 or newer.[[BR]]
     35[[BR]]Description:[[BR]]
     36  Costanza is used to segment compartments (cells) in a stack and to extract quantitative data for the extracted compartments, including intensities from a second stack.[[BR]]
     37[[BR]]Usage:[[BR]]
     38  Open the Costanza plugin and the image/stack you want to segment. Chose parameters for the including processes, select input and output options and run the plugin. More information available in http://www.thep.lu.se/~henrik/Costanza/doc/userguide.pdf .[[BR]]