Timeline


and

Nov 18, 2010:

5:07 PM Installation edited by olle
Changed path delimiter for Windows paths from '/' to '\'. (diff)
5:04 PM Installation edited by olle
Description updated by fixing typo. (diff)
2:29 PM Installation edited by fredrik
(diff)
2:20 PM Ticket #441 (Use In Project button should be shaded if no project is active) closed by olle
worksforme: Ticket closed, as the desired behavior already has been implemented …
2:16 PM Ticket #707 (Renaming of search parameter sets) closed by olle
fixed: The ticket is closed, as the desired functionality has been added. …
2:12 PM Installation edited by fredrik
(diff)
2:11 PM Installation edited by fredrik
(diff)
2:11 PM Changeset [3998] by olle
Refs #707. Refs #362. Refs #287. First version of support for editing …
1:14 PM Changeset [3997] by olle
Refs #707. Refs #471. First version of support for editing of OMSSA …
12:55 PM Changeset [3996] by olle
Refs #707. Refs #534. Class/file …
12:44 PM Changeset [3995] by gregory
Refs #698. Removed couple of unused private methods.
12:37 PM Changeset [3994] by gregory
Refs #698. Removed method getHitPeakListForm from FormFactory.
12:24 PM Changeset [3993] by olle
Refs #707. Refs #362. Class/file …
12:19 PM Changeset [3992] by olle
Refs #707. Refs #287. English dictionary file locale/en/dictionary in …
12:18 PM Changeset [3991] by gregory
Refs #698. Moved method getHitPeakListForm from FormFactory to action …
12:08 PM Changeset [3990] by gregory
Refs #698. Moved method getPeakListForm from FormFactory into action …

Nov 17, 2010:

2:44 PM ReleaseProcedure edited by gregory
(diff)
2:44 PM TagRelease created by gregory
Adding instructions on how to tag a release
2:38 PM ReleaseProcedure edited by gregory
(diff)
2:37 PM UpdateDatabaseSchemaDoc created by gregory
Adding instructions on how to generate database schema doc
2:36 PM Changeset [3989] by olle
Refs #707. Refs #287. Refs #290. First version of support for editing …
2:29 PM Changeset [3988] by gregory
Changed my developer status in the about text.
2:07 PM Extensions/GettingStarted edited by gregory
Linking to trunk versions of the examples (diff)
2:02 PM Extensions/GettingStarted edited by gregory
Linking build.xml to trunk version (diff)
2:00 PM Changeset [3987] by gregory
Added example code for extensions that is available from the manual.
1:44 PM Changeset [3986] by gregory
Refs #698. Moved method addHiddenField from FormFactory into Table …
1:32 PM Changeset [3985] by gregory
Refs #698. Removed methods newOriginalQuantityField and …
11:23 AM Changeset [3984] by gregory
Refs #698. Moved method addHiddenField(Form...) from FormFactory into …
11:11 AM Changeset [3983] by gregory
Refs #698. Removing method selectLocalSampleIdWithAllOption from …
11:03 AM Changeset [3982] by gregory
Refs #698. Removing couple of private methods for creating fields in …
10:02 AM Changeset [3981] by gregory
Refs #547. Fixed problem with long response times by setting …
9:53 AM Changeset [3980] by gregory
Refs #698. Removed method getNewProtocolForm from FormFactory

Nov 16, 2010:

2:50 PM Ticket #710 (Select multiple databases for Mascot search) closed by olle
fixed: Ticket is closed as the desired functionality has been added. Should …

Nov 15, 2010:

11:15 AM Changeset [3979] by gregory
Fixing warning from ant when compiling. Added missing …

Nov 11, 2010:

2:48 PM Changeset [3978] by olle
Refs #710. Refs #534. Class/file gui/form/MascotStorageForm.java in …
10:37 AM Changeset [3977] by fredrik
Added log warning message
8:36 AM Changeset [3976] by gregory
Adding tests for many projects

Nov 10, 2010:

4:42 PM Changeset [3975] by fredrik
Fixes #724. Fixed bug
4:02 PM Changeset [3974] by olle
Refs #710. Refs #534. Class/file …
3:41 PM Changeset [3973] by olle
Refs #710. Refs #534. Mascot search updated to support selection of …
3:25 PM Changeset [3972] by fredrik
Fixes #724. Added plugin that lists ion injection times to file.
3:25 PM Ticket #724 (Report ion injection times) closed by fredrik
fixed: (In [3972]) Fixes #724. Added plugin that lists ion injection times to …
3:24 PM Ticket #724 (Report ion injection times) created by fredrik
A plugin that reports ion injectuion times in an mzML file should be …
11:24 AM Changeset [3971] by olle
Refs #723. Refs #290. Icon image repository www/static/img/icons/ in …
11:22 AM Changeset [3970] by olle
Refs #723. Refs #290. Icon image repository www/static/img/icons/ in …
10:42 AM Ticket #723 (Button icon should be displayed in gray if the button action is disabled) closed by olle
fixed: The ticket is closed, as the desired functionality has been added. …
10:02 AM Changeset [3969] by olle
Refs #723. Refs #290. Refs #441. Icon image repository …
9:53 AM Changeset [3968] by olle
Refs #723. Class/file gui/web/GUIConverter.java in client/servlet/ …
8:44 AM Ticket #723 (Button icon should be displayed in gray if the button action is disabled) created by olle
A button icon should be displayed in gray if the button action is …
8:20 AM Ticket #702 (Logged-in users are not always visible) closed by gregory
worksforme: Needs to be verified so it's not just a session timeout.

Nov 8, 2010:

3:02 PM Ticket #719 (Project table scroller on Home page results in NullPointerException) closed by olle
fixed: The ticket is closed, as the desired functionality has been added. …
3:01 PM Ticket #718 (Menu items below View > Trash should be inactivated if they are empty) closed by olle
fixed: The ticket is closed, as the desired functionality has been added. …
3:00 PM Ticket #704 (Deleting a project does not place the project in Trash) closed by olle
fixed: The ticket is closed, as the desired functionality has been added. …
2:59 PM Ticket #547 (Select Project list too long) closed by olle
fixed: The ticket is closed, as the desired functionality has been added. …
2:58 PM Ticket #700 (New X!tandem form) closed by olle
fixed: The ticket is closed, as the desired functionality has been added. …
2:51 PM Changeset [3967] by olle
Refs #718. Class/file gui/MainMenu.java in client/servlet/ updated to …
2:29 PM Ticket #722 (Add delete button to hits table for partial deletion of ...) created by gregory
2:21 PM Ticket #721 (Webservice create project fails to share project directory to project) created by gregory
1:56 PM Ticket #720 (Add context for ViewFile) created by gregory
To enable extensions that work on a file for a specific file type.
12:41 PM Changeset [3966] by olle
Refs #719. Class/file action/read/ViewHome.java in client/servleT/ …
11:52 AM Changeset [3965] by gregory
Refs #698. Removed method getUserPreferencesConfigurationForm from …
11:25 AM Changeset [3964] by olle
Refs #719. Class/file action/read/ViewHome.java in client/servleT/ …
11:15 AM Ticket #719 (Project table scroller on Home page results in NullPointerException) created by olle
If a user has more projects than can be fitted in the projects table …
10:57 AM Ticket #718 (Menu items below View > Trash should be inactivated if they are empty) created by gregory
Also if there is nothing in the trash, the main View -> Trash should …
9:13 AM Ticket #717 (Move some of the hit table buttons to an Extensions button) created by gregory
The toolbar is far to long and wraps over two lines. Move some of the …

Nov 5, 2010:

1:24 PM Changeset [3963] by gregory
Refs #716. Removed description cell in table popup.
1:21 PM Changeset [3962] by gregory
Refs #716. Removed description attribute of FileContext?
1:20 PM Ticket #716 (Remove description in Extension popups) created by gregory
12:50 PM Changeset [3961] by gregory
Fixed last column border in popups aswell.
12:42 PM Changeset [3960] by gregory
Added titles to ViewHelp? and ViewAbout?
12:35 PM Changeset [3959] by gregory
Server messages title is now wide.
12:09 PM Changeset [3958] by olle
Refs #704. Refs #585. Class/file plugins/ProjectToTrash.java in …
11:59 AM Changeset [3957] by olle
Refs #704. Refs #585. Class/file action/project/TrashProject.java in …
11:52 AM Changeset [3956] by olle
Refs #704. Refs #523. Refs #620. Routines for permanently removing …
11:49 AM Changeset [3955] by gregory
Removed 'New Project' button from My Projects table, also made …
11:32 AM Changeset [3954] by gregory
Fixed shadown for popup. Filter row is hidden if there are no visible …
11:12 AM Changeset [3953] by olle
Refs #704. Refs #523. Refs #620. Routines for listing, restoring or …
10:51 AM Changeset [3952] by olle
Refs #704. Refs #585. Refs #287. Project table tool bar updated to …
10:39 AM Changeset [3951] by gregory
Padded data within tables and made the font a bit smaller.
10:36 AM Changeset [3950] by gregory
Centered icons in toolbars more precisely.
10:32 AM Changeset [3949] by gregory
Added shaded background to titles and toolbars.
10:23 AM Changeset [3948] by gregory
Cleaned up small log to match the size of the menu bar. Also modified …

Nov 4, 2010:

4:08 PM Changeset [3947] by gregory
Refs #698. Moved method getSpectrumFileContactForm from FormFactory …
4:02 PM Changeset [3946] by gregory
Refs #698. Removed method addTableRow from FormFactory, also …
2:56 PM Changeset [3945] by gregory
Refs #698. Moved method getSpectrumFileInstrumentForm from …

Nov 3, 2010:

2:36 PM Changeset [3944] by gregory
Refs #691. Removed action ListPeakListSet? as it was only used from the …
10:00 AM Changeset [3943] by gregory
Refs #698. Removed method getExportPeakListSetForm. Also the …

Nov 2, 2010:

2:58 PM Changeset [3942] by gregory
Refs #698. Removing method getSetFilterForm and related methods/classes.
2:06 PM Changeset [3941] by gregory
Refs #698. Moved method getForm(FormTemplateInterface?) and related …
1:23 PM Changeset [3940] by gregory
Refs #698. Fixing compile error.
1:14 PM Changeset [3939] by gregory
Refs #698. Removed method getViewUserPropertiesForm.
12:54 PM Changeset [3938] by gregory
Refs #698. Removed method getMyProfilePropertiesForm.
12:46 PM Changeset [3937] by gregory
Refs #698. Moved populateForm implementation to ProteiosAction.
11:20 AM Changeset [3936] by gregory
Refs #698. Removed unused methods directoryOptions and selectDirectory.
11:16 AM Changeset [3935] by gregory
Refs #698. Renaming method getFormImpl to getForm thus removing old …
9:29 AM Changeset [3934] by gregory
Refs #698. Moved getSpectrumFileContactInputForm to action …

Nov 1, 2010:

3:59 PM Installation edited by olle
Section "Quick Install" updated with recommendation to avoid space … (diff)
1:42 PM Changeset [3933] by olle
Refs #547. Refs #287. First version of limited number of items in the …
11:25 AM Changeset [3932] by gregory
Refs #698. Removed unused method newQuantityField from FormFactory.
11:22 AM Changeset [3931] by gregory
Refs #698. Removed unused method newExtractQuantityField from FormFactory.
11:19 AM Changeset [3930] by gregory
Refs #698. Removed unused private method listStringToStringList().
11:07 AM Changeset [3929] by gregory
Refs #698. Moved getTrashCanForm method out from FormFactory? and into …
9:34 AM Changeset [3928] by gregory
Refs #698. Removed method getFileProtocolTypeForm and …
8:56 AM Changeset [3927] by gregory
Refs #698. Removed method getSeparationForm as this method is not used …
8:51 AM Changeset [3926] by gregory
Removing author attribute as I am no longer the main author of that file.
8:45 AM Changeset [3925] by gregory
Setting Id keyword

Oct 29, 2010:

2:38 PM Changeset [3924] by gregory
Refs #698. Fixed plugin selection form for import, convert and analyse …
11:26 AM Ticket #709 (Upload file allows to save without selecting a local file) closed by olle
fixed: The ticket is closed, as a solution has been found to the described …
11:21 AM Ticket #713 (By default hide the description field of directories and files in ...) closed by olle
fixed: The ticket is closed, as the desired functionality has been added. …
11:17 AM Ticket #714 (Moving many files fails) closed by olle
fixed: The ticket is closed, as a solution has been found to the described …
11:07 AM Changeset [3923] by olle
Refs #714. Code for moving files updated to transfer list of id values …
9:44 AM Changeset [3922] by olle
Refs #714. Class/file waf/AbstractAction.java in api/waf/ updated: 1. …

Oct 28, 2010:

6:10 PM Ticket #715 (Windows install fails) created by fredrik
If the Proteios package is downloaded to a place containing a space in …
1:16 PM Changeset [3921] by gregory
Removed closePopup method, using hide() instead
11:22 AM Changeset [3920] by gregory
Making javascript context unaware. Context is now defined in …
11:01 AM Changeset [3919] by gregory
Tidying javascript, also fixing initTable so it does'nt do anything if …

Oct 26, 2010:

8:30 AM Changeset [3918] by gregory
Debug mode now shows list parameters correctly

Oct 25, 2010:

10:07 AM Changeset [3917] by olle
Refs #713. Class/file action/directory/ViewActiveDirectory.java in …
9:57 AM Changeset [3916] by olle
Refs #713. Class/file action/directory/ViewActiveDirectory.java in …
9:39 AM Changeset [3915] by olle
Refs #713. Default setting for tables in the file/directory form …
9:39 AM Ticket #714 (Moving many files fails) created by gregory
Probably this means the file id's that are to be moved are placed in …

Oct 21, 2010:

3:56 PM Changeset [3914] by fredrik
Refs #672. Handling peptide total intensity of null
3:49 PM Changeset [3913] by fredrik
Refs #672. Handling peptide total intensity of null
3:10 PM Changeset [3912] by fredrik
Refs #672. Handling spectrum lookup problems.
2:22 PM Changeset [3911] by olle
Refs #709. Class/file action/file/SaveFile.java in client/servlet/ …
2:20 PM Changeset [3910] by fredrik
Refs #672. Avoiding rare null pointer exception
2:18 PM Changeset [3909] by olle
Refs #709. Class/file action/file/SaveFile.java in client/servlet/ …
11:47 AM Changeset [3908] by gregory
Refs #711. Added feature to use nested fieldsets within forms. These …
11:21 AM Changeset [3907] by olle
Refs #700. New single-form version of routine for separating standard …
10:58 AM Changeset [3906] by olle
Refs #700. Changes added to class …
8:56 AM Changeset [3905] by gregory
Refs #711. Using + and - icons for fieldset toggling.

Oct 20, 2010:

4:47 PM Changeset [3904] by olle
Refs #700. Refs #287. First version of support for simple search form …
3:49 PM Changeset [3903] by olle
Refs #700. Class/file gui/form/XTandemParameterSetFormSimple.java in …
2:41 PM Changeset [3902] by olle
Refs #700. New class/file gui/form/XTandemParameterSetFormSimple.java …
2:13 PM Changeset [3901] by olle
Refs #700. Class/file gui/form/XTandemParameterSetForm.java in …
1:18 PM Changeset [3900] by olle
Refs #700. Creation of option alternatives for X!Tandem searches is …
1:14 PM Ticket #713 (By default hide the description field of directories and files in ...) created by gregory
Also modify the Name column to be a big text column by calling …
1:10 PM Changeset [3899] by gregory
Fixes #712.
1:10 PM Ticket #712 (Make "Upload Demo Files" into a context enabled action) closed by gregory
fixed: (In [3899]) Fixes #712.
1:10 PM Ticket #712 (Make "Upload Demo Files" into a context enabled action) created by gregory
It should not be available as a button in the toolbar.
12:38 PM Changeset [3898] by olle
Refs #700. Class/file gui/form/Select.java in client/servlet/ updated …
12:23 PM Changeset [3897] by olle
Refs #700. Select boxes updated to allow hidden select boxes: 1. …
11:25 AM Changeset [3896] by gregory
Refs #711. Added rule that if there is only one fieldset in a form the …
10:00 AM Changeset [3895] by gregory
Adding target clean-test in client/servlet/build.xml
9:35 AM Ticket #711 (Let the user show/hide fieldsets in a form) closed by gregory
fixed: (In [3894]) Fixes #711. Use method fieldset.setOpen(false) to hide the …
9:35 AM Changeset [3894] by gregory
Fixes #711. Use method fieldset.setOpen(false) to hide the fieldset.
9:35 AM Ticket #711 (Let the user show/hide fieldsets in a form) created by gregory
This would be a way for developers to hide advanced fields by default.

Oct 19, 2010:

2:40 PM Changeset [3893] by olle
Refs #700. Class/file gui/form/XTandemParameterSetForm.java in …
2:13 PM Ticket #710 (Select multiple databases for Mascot search) created by fredrik
It should be possible to select more than one database for Mascot …
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