source: trunk/test @ 3846

Name Size Rev Age Author Last Change
../
data 3840   10 months Peter merge release yat-0.16.2 into trunk
yat-hello 3330   6 years Peter update copyright years
alignment2.cc 2.8 KB 2881   8 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
alignment.cc 4.0 KB 2881   8 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager1.cc 1.2 KB 2881   8 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager3.cc 1.3 KB 2881   8 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager4.cc 4.0 KB 2881   8 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager.cc 14.9 KB 3330   6 years Peter update copyright years
bam.cc 12.0 KB 3733   2 years Peter convenience functions to access strand of alignment
bam_header2.cc 1.7 KB 3210   6 years Peter update copyright years
bam_header.cc 5.2 KB 3661   3 years Peter update copyright years
bam_iterator.cc 3.7 KB 3698   3 years Peter merge release 0.14.4 into trunk
bam_pair_analyse.cc 1.7 KB 3295   6 years Peter merge release 0.12 into trunk
bam_pair_iterator.cc 2.5 KB 3295   6 years Peter merge release 0.12 into trunk
bam_read_filter.cc 1.7 KB 3210   6 years Peter update copyright years
bam_region_iterator.cc 2.6 KB 3682   3 years Peter update copyright years
chi2.cc 1.9 KB 3726   2 years Peter correct include
cigar2.cc 1.7 KB 3342   6 years Peter merge 0.12.2 into trunk
cigar.cc 3.5 KB 3840   10 months Peter merge release yat-0.16.2 into trunk
cigar_iterator.cc 2.8 KB 3417   5 years Peter updating copyright statements
cmd_test.sh 978 bytes 3114   7 years Peter update copyright years
codon.cc 1.8 KB 3330   6 years Peter update copyright years
commandline.cc 18.2 KB 2893   7 years Peter run (also C++) tests in specific test dir so test can create temporary …
concept.cc 2.3 KB 2919   7 years Peter update copyright years
consensus_inputranker.cc 3.1 KB 2919   7 years Peter update copyright years
copy_k_of_n.cc 1.7 KB 3454   4 years Peter closes #838
crossvalidation.cc 2.5 KB 2919   7 years Peter update copyright years
data_lookup_1d.cc 5.6 KB 3114   7 years Peter update copyright years
data_weight.cc 1.6 KB 2919   7 years Peter update copyright years
data_weight_proxy.cc 3.1 KB 3330   6 years Peter update copyright years
defs.sh.in 4.1 KB 3844   9 months Peter autoreconf uses libtoolize so skip when that is absent rather than …
deleter.cc 1.3 KB 2881   8 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
diagonal_matrix.cc 3.5 KB 3660   3 years Peter missing include
distance.cc 9.0 KB 3550   3 years Peter Update copyright years. Happy New Year
dna.cc 3.4 KB 2881   8 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
dna_reverse_complement.cc 2.3 KB 3628   3 years Peter merge release 0.14.2 into trunk
doxygen_test.sh 1.2 KB 3819   10 months Peter Remove leftover from recursive Makefile. 'test/doxygen_test.log' …
ensemble.cc 5.7 KB 2919   7 years Peter update copyright years
fasta.cc 2.6 KB 3579   3 years Peter merge release 0.14 into trunk
feature_selection.cc 3.4 KB 2919   7 years Peter update copyright years
fileutil.cc 6.6 KB 2919   7 years Peter update copyright years
fisher.cc 6.4 KB 3743   23 months Peter merge release 0.15.1 into trunk
gaussian_mixture.cc 2.9 KB 3645   3 years Peter missing include
gen_libmy_shared.sh 1.8 KB 3130   7 years Peter merge release 0.11 into trunk
gen_libmy_static.sh 1.5 KB 3130   7 years Peter merge release 0.11 into trunk
genomic_position.cc 1.4 KB 2919   7 years Peter update copyright years
getline_iterator.cc 2.0 KB 2919   7 years Peter update copyright years
getvector.cc 1.9 KB 3639   3 years Peter new function getvector. Combination of getline and split.
gff.cc 3.5 KB 3840   10 months Peter merge release yat-0.16.2 into trunk
help.cc 1.2 KB 2919   7 years Peter update copyright years
help_test.sh 1.3 KB 3114   7 years Peter update copyright years
histogram.cc 2.2 KB 2919   7 years Peter update copyright years
igp.cc 1.4 KB 2919   7 years Peter update copyright years
index.cc 2.7 KB 2919   7 years Peter update copyright years
init.sh 2.5 KB 3036   7 years Peter common_defs does two things: 1) init test scripts 2) defines some …
inputranker.cc 1.9 KB 2919   7 years Peter update copyright years
interpolation.cc 3.8 KB 2919   7 years Peter update copyright years
iterator.cc 22.6 KB 3534   3 years Peter move test::weighted_iterator_archetype to …
kendall.cc 4.0 KB 2881   8 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
kernel.cc 7.3 KB 2919   7 years Peter update copyright years
kernel_lookup.cc 5.3 KB 2919   7 years Peter update copyright years
kernel_matrix.cc 1.6 KB 3190   6 years Peter new class KernelMatrix?. closes #381
kernel_pca.cc 4.3 KB 2919   7 years Peter update copyright years
knn.cc 11.2 KB 2919   7 years Peter update copyright years
kolmogorov_smirnov.cc 7.3 KB 3018   7 years Peter merge patch release 0.10.2 into trunk
large_file.cc 1.5 KB 3114   7 years Peter update copyright years
likelihood_ratio_test_binomial.cc 1.4 KB 3138   6 years Peter change name of class and implement function llr(). closes #769
Makefile 798 bytes 2749   8 years Peter add small convenience Makefiles in subdirs. closes #703
Makefile.am 13.3 KB 3828   10 months Peter Make the Scheduler recyclable i.e. allow jobs to be submitted also …
matrix.cc 7.7 KB 2881   8 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
matrix_expression.cc 3.6 KB 3654   3 years Peter Basic implementation of transpose(Expression). closes #880
matrix_lookup.cc 6.3 KB 2919   7 years Peter update copyright years
matrix_lookup_weighted.cc 3.3 KB 2919   7 years Peter update copyright years
matrix_weighted.cc 3.1 KB 2919   7 years Peter update copyright years
merge.cc 3.3 KB 2919   7 years Peter update copyright years
merge_iterator.cc 3.7 KB 3417   5 years Peter updating copyright statements
nbc.cc 1.8 KB 2919   7 years Peter update copyright years
ncc.cc 11.4 KB 2919   7 years Peter update copyright years
negative_binomial.cc 5.0 KB 3792   14 months Peter update copyright years
nni.cc 5.9 KB 2919   7 years Peter update copyright years
normalization.cc 17.8 KB 3550   3 years Peter Update copyright years. Happy New Year
ostream_iterator.cc 1.6 KB 3152   6 years Peter add missing source file. refs #770
pca.cc 1.6 KB 2919   7 years Peter update copyright years
perceptron.cc 5.3 KB 3709   3 years Peter new class that impements a Perceptron - special case of multivariate …
phred.cc 1.4 KB 3325   6 years Peter new functions phred and phred_inv that calculate phred scaled …
pileup.cc 8.9 KB 3802   13 months Peter closes #918. implement function Pileup::size
poisson.cc 4.1 KB 3662   3 years Peter close #882
print_what.cc 1.8 KB 3730   2 years Peter new function print_what() to print error message from std::nested_exception
priority_queue.cc 2.4 KB 3832   10 months Peter merge release 0.16.1 intro trunk
queue2.cc 1.9 KB 3063   7 years Peter add another test for new class Queue
queue.cc 1.7 KB 3062   7 years Peter implement copy and assignment (compiler generated does not compile …
range.cc 1.5 KB 3330   6 years Peter update copyright years
README 4.6 KB 2754   8 years Peter avoid suggesting bug reports to trac, prefer single quote (rather than …
regression.cc 17.2 KB 3814   11 months Peter decrease stringency in test, to avoid spurious test failure on osx …
rnd.cc 2.2 KB 3469   4 years Peter New class for NegativeHyperGeometric?. closes #857. The implementation …
rng-mt.cc 3.6 KB 2943   7 years Peter merge release 0.10 into trunk
roc.cc 11.8 KB 3439   5 years Peter merge release 0.13 into trunk
scheduler2.cc 2.5 KB 3402   5 years Peter add interface to set priority of Scheduler::Job and make the order the …
scheduler3.cc 2.1 KB 3423   5 years Peter merge from 0.13-stable branch. Avoid compiler warnings also in trunk.
scheduler4.cc 1.9 KB 3686   3 years Peter only send jobs to queue if they have been submitted
scheduler5.cc 1.9 KB 3823   10 months Peter Merge release 0.16 into trunk
scheduler6.cc 2.0 KB 3828   10 months Peter Make the Scheduler recyclable i.e. allow jobs to be submitted also …
scheduler.cc 2.2 KB 3826   10 months Peter function to access number of threads in Scheduler. closes #914
score.cc 3.9 KB 2919   7 years Peter update copyright years
segment.cc 12.2 KB 3661   3 years Peter update copyright years
smart_ptr.cc 1.3 KB 2919   7 years Peter update copyright years
smith_waterman.cc 1.8 KB 3209   6 years Peter add missing source file and fix compilation error --without-samtools
smoother.cc 1.8 KB 3550   3 years Peter Update copyright years. Happy New Year
spearman.cc 4.7 KB 2919   7 years Peter update copyright years
split.cc 2.4 KB 2881   8 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
statistics.cc 12.8 KB 3792   14 months Peter update copyright years
stream_redirect.cc 3.7 KB 2919   7 years Peter update copyright years
subset_generator.cc 11.3 KB 2919   7 years Peter update copyright years
Suite.cc 4.1 KB 3846   9 months Peter avoid compiler warning about ignoring return value from chdir
Suite.h 21.8 KB 3846   9 months Peter avoid compiler warning about ignoring return value from chdir
svd.cc 3.6 KB 2919   7 years Peter update copyright years
svm.cc 4.6 KB 2919   7 years Peter update copyright years
svm_multi_class.cc 4.9 KB 2919   7 years Peter update copyright years
target.cc 3.4 KB 2919   7 years Peter update copyright years
ttest.cc 1.7 KB 3114   7 years Peter update copyright years
tukey.cc 2.6 KB 3550   3 years Peter Update copyright years. Happy New Year
utility.cc 22.9 KB 3803   13 months Peter implement wrapper function around getcwd. closes #921.
vcf.cc 4.1 KB 3747   22 months Peter new class for an VCF entry; behaviour of default construction still …
vcf_compare.cc 1004 bytes 3759   20 months Peter refs #905. New class, VcfCompare?, to compare to VCF objects used e.g. …
vcf_file2.cc 1.1 KB 3763   19 months Peter refs #905 Some naive tests for class VcfFile?. Also add a test VCF …
vcf_file.cc 2.1 KB 3774   19 months Peter implement VcfIterator?. refs #905
vcf_header.cc 1.8 KB 3750   20 months Peter refs #905. Adding class VcfHeader? handling the header section in a VCF …
vector.cc 13.4 KB 3623   3 years Peter merge release 0.14.1 into trunk move functions 'create_gsl_vector' …
vector_expression.cc 6.1 KB 3677   3 years Peter refs #897; some tests for bug #897
version.cc 1.8 KB 3114   7 years Peter update copyright years
view.cc 4.3 KB 3661   3 years Peter update copyright years
weighted_iterator_archetype.cc 5.4 KB 3579   3 years Peter merge release 0.14 into trunk
yat_config_cblas_test.sh 1.0 KB 3114   7 years Peter update copyright years
yat_config_test.sh 1.7 KB 3800   13 months Peter allow multiple arguments in yat-config. closes #911
yat_cpp_add_flag_test.sh 1.6 KB 3114   7 years Peter update copyright years
yat_cxx_add_flag_test.sh 1.5 KB 3114   7 years Peter update copyright years
yat_have_svn_wc_test.sh 1.1 KB 3114   7 years Peter update copyright years
yat_header_assert_test.sh 1.2 KB 3825   10 months Peter closes #926 In tests call configure set CXX to the one found at …
yat_ld_add_flag_test.sh 1.6 KB 3114   7 years Peter update copyright years
yat_lt_compile_ifelse_test.sh 1.9 KB 3825   10 months Peter closes #926 In tests call configure set CXX to the one found at …
yat_lt_link_ifelse_test.sh 2.4 KB 3825   10 months Peter closes #926 In tests call configure set CXX to the one found at …
yat_lt_link_la_ifelse_test.sh 1.5 KB 3825   10 months Peter closes #926 In tests call configure set CXX to the one found at …
yat_m4_test2.sh 1.5 KB 3825   10 months Peter closes #926 In tests call configure set CXX to the one found at …
yat_m4_test.sh 1.7 KB 3825   10 months Peter closes #926 In tests call configure set CXX to the one found at …
yat_m4_with_bam_test.sh 1.4 KB 3825   10 months Peter closes #926 In tests call configure set CXX to the one found at …
yat_msg_error_test2.sh 1.2 KB 3330   6 years Peter update copyright years
yat_msg_error_test.sh 1.5 KB 3825   10 months Peter closes #926 In tests call configure set CXX to the one found at …
yat_pc_test.sh 3.1 KB 3661   3 years Peter update copyright years
yat_prog_move_if_change_test.sh 1.2 KB 3114   7 years Peter update copyright years
yat_revision_header_test.sh 1.6 KB 3825   10 months Peter closes #926 In tests call configure set CXX to the one found at …
yat_svn_release_year_test.sh 1.8 KB 3114   7 years Peter update copyright years
yat_svn_revision_test.sh 1.4 KB 3792   14 months Peter update copyright years
yat_use_libtool_tag_test.sh 1.4 KB 3330   6 years Peter update copyright years
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