source: trunk/test @ 3846

Name Size Rev Age Author Last Change
../
data 3840   3 months Peter merge release yat-0.16.2 into trunk
yat-hello 3330   5 years Peter update copyright years
alignment2.cc 2.8 KB 2881   7 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
alignment.cc 4.0 KB 2881   7 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager1.cc 1.2 KB 2881   7 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager3.cc 1.3 KB 2881   7 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager4.cc 4.0 KB 2881   7 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
averager.cc 14.9 KB 3330   5 years Peter update copyright years
bam.cc 12.0 KB 3733   20 months Peter convenience functions to access strand of alignment
bam_header2.cc 1.7 KB 3210   6 years Peter update copyright years
bam_header.cc 5.2 KB 3661   2 years Peter update copyright years
bam_iterator.cc 3.7 KB 3698   2 years Peter merge release 0.14.4 into trunk
bam_pair_analyse.cc 1.7 KB 3295   5 years Peter merge release 0.12 into trunk
bam_pair_iterator.cc 2.5 KB 3295   5 years Peter merge release 0.12 into trunk
bam_read_filter.cc 1.7 KB 3210   6 years Peter update copyright years
bam_region_iterator.cc 2.6 KB 3682   2 years Peter update copyright years
chi2.cc 1.9 KB 3726   22 months Peter correct include
cigar2.cc 1.7 KB 3342   5 years Peter merge 0.12.2 into trunk
cigar.cc 3.5 KB 3840   3 months Peter merge release yat-0.16.2 into trunk
cigar_iterator.cc 2.8 KB 3417   4 years Peter updating copyright statements
cmd_test.sh 978 bytes 3114   6 years Peter update copyright years
codon.cc 1.8 KB 3330   5 years Peter update copyright years
commandline.cc 18.2 KB 2893   7 years Peter run (also C++) tests in specific test dir so test can create temporary …
concept.cc 2.3 KB 2919   7 years Peter update copyright years
consensus_inputranker.cc 3.1 KB 2919   7 years Peter update copyright years
copy_k_of_n.cc 1.7 KB 3454   4 years Peter closes #838
crossvalidation.cc 2.5 KB 2919   7 years Peter update copyright years
data_lookup_1d.cc 5.6 KB 3114   6 years Peter update copyright years
data_weight.cc 1.6 KB 2919   7 years Peter update copyright years
data_weight_proxy.cc 3.1 KB 3330   5 years Peter update copyright years
defs.sh.in 4.1 KB 3844   2 months Peter autoreconf uses libtoolize so skip when that is absent rather than …
deleter.cc 1.3 KB 2881   7 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
diagonal_matrix.cc 3.5 KB 3660   2 years Peter missing include
distance.cc 9.0 KB 3550   3 years Peter Update copyright years. Happy New Year
dna.cc 3.4 KB 2881   7 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
dna_reverse_complement.cc 2.3 KB 3628   3 years Peter merge release 0.14.2 into trunk
doxygen_test.sh 1.2 KB 3819   4 months Peter Remove leftover from recursive Makefile. 'test/doxygen_test.log' …
ensemble.cc 5.7 KB 2919   7 years Peter update copyright years
fasta.cc 2.6 KB 3579   3 years Peter merge release 0.14 into trunk
feature_selection.cc 3.4 KB 2919   7 years Peter update copyright years
fileutil.cc 6.6 KB 2919   7 years Peter update copyright years
fisher.cc 6.4 KB 3743   16 months Peter merge release 0.15.1 into trunk
gaussian_mixture.cc 2.9 KB 3645   3 years Peter missing include
gen_libmy_shared.sh 1.8 KB 3130   6 years Peter merge release 0.11 into trunk
gen_libmy_static.sh 1.5 KB 3130   6 years Peter merge release 0.11 into trunk
genomic_position.cc 1.4 KB 2919   7 years Peter update copyright years
getline_iterator.cc 2.0 KB 2919   7 years Peter update copyright years
getvector.cc 1.9 KB 3639   3 years Peter new function getvector. Combination of getline and split.
gff.cc 3.5 KB 3840   3 months Peter merge release yat-0.16.2 into trunk
help.cc 1.2 KB 2919   7 years Peter update copyright years
help_test.sh 1.3 KB 3114   6 years Peter update copyright years
histogram.cc 2.2 KB 2919   7 years Peter update copyright years
igp.cc 1.4 KB 2919   7 years Peter update copyright years
index.cc 2.7 KB 2919   7 years Peter update copyright years
init.sh 2.5 KB 3036   6 years Peter common_defs does two things: 1) init test scripts 2) defines some …
inputranker.cc 1.9 KB 2919   7 years Peter update copyright years
interpolation.cc 3.8 KB 2919   7 years Peter update copyright years
iterator.cc 22.6 KB 3534   3 years Peter move test::weighted_iterator_archetype to …
kendall.cc 4.0 KB 2881   7 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
kernel.cc 7.3 KB 2919   7 years Peter update copyright years
kernel_lookup.cc 5.3 KB 2919   7 years Peter update copyright years
kernel_matrix.cc 1.6 KB 3190   6 years Peter new class KernelMatrix?. closes #381
kernel_pca.cc 4.3 KB 2919   7 years Peter update copyright years
knn.cc 11.2 KB 2919   7 years Peter update copyright years
kolmogorov_smirnov.cc 7.3 KB 3018   7 years Peter merge patch release 0.10.2 into trunk
large_file.cc 1.5 KB 3114   6 years Peter update copyright years
likelihood_ratio_test_binomial.cc 1.4 KB 3138   6 years Peter change name of class and implement function llr(). closes #769
Makefile 798 bytes 2749   7 years Peter add small convenience Makefiles in subdirs. closes #703
Makefile.am 13.3 KB 3828   4 months Peter Make the Scheduler recyclable i.e. allow jobs to be submitted also …
matrix.cc 7.7 KB 2881   7 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
matrix_expression.cc 3.6 KB 3654   2 years Peter Basic implementation of transpose(Expression). closes #880
matrix_lookup.cc 6.3 KB 2919   7 years Peter update copyright years
matrix_lookup_weighted.cc 3.3 KB 2919   7 years Peter update copyright years
matrix_weighted.cc 3.1 KB 2919   7 years Peter update copyright years
merge.cc 3.3 KB 2919   7 years Peter update copyright years
merge_iterator.cc 3.7 KB 3417   4 years Peter updating copyright statements
nbc.cc 1.8 KB 2919   7 years Peter update copyright years
ncc.cc 11.4 KB 2919   7 years Peter update copyright years
negative_binomial.cc 5.0 KB 3792   7 months Peter update copyright years
nni.cc 5.9 KB 2919   7 years Peter update copyright years
normalization.cc 17.8 KB 3550   3 years Peter Update copyright years. Happy New Year
ostream_iterator.cc 1.6 KB 3152   6 years Peter add missing source file. refs #770
pca.cc 1.6 KB 2919   7 years Peter update copyright years
perceptron.cc 5.3 KB 3709   2 years Peter new class that impements a Perceptron - special case of multivariate …
phred.cc 1.4 KB 3325   5 years Peter new functions phred and phred_inv that calculate phred scaled …
pileup.cc 8.9 KB 3802   6 months Peter closes #918. implement function Pileup::size
poisson.cc 4.1 KB 3662   2 years Peter close #882
print_what.cc 1.8 KB 3730   20 months Peter new function print_what() to print error message from std::nested_exception
priority_queue.cc 2.4 KB 3832   3 months Peter merge release 0.16.1 intro trunk
queue2.cc 1.9 KB 3063   6 years Peter add another test for new class Queue
queue.cc 1.7 KB 3062   6 years Peter implement copy and assignment (compiler generated does not compile …
range.cc 1.5 KB 3330   5 years Peter update copyright years
README 4.6 KB 2754   7 years Peter avoid suggesting bug reports to trac, prefer single quote (rather than …
regression.cc 17.2 KB 3814   4 months Peter decrease stringency in test, to avoid spurious test failure on osx …
rnd.cc 2.2 KB 3469   4 years Peter New class for NegativeHyperGeometric?. closes #857. The implementation …
rng-mt.cc 3.6 KB 2943   7 years Peter merge release 0.10 into trunk
roc.cc 11.8 KB 3439   4 years Peter merge release 0.13 into trunk
scheduler2.cc 2.5 KB 3402   5 years Peter add interface to set priority of Scheduler::Job and make the order the …
scheduler3.cc 2.1 KB 3423   4 years Peter merge from 0.13-stable branch. Avoid compiler warnings also in trunk.
scheduler4.cc 1.9 KB 3686   2 years Peter only send jobs to queue if they have been submitted
scheduler5.cc 1.9 KB 3823   4 months Peter Merge release 0.16 into trunk
scheduler6.cc 2.0 KB 3828   4 months Peter Make the Scheduler recyclable i.e. allow jobs to be submitted also …
scheduler.cc 2.2 KB 3826   4 months Peter function to access number of threads in Scheduler. closes #914
score.cc 3.9 KB 2919   7 years Peter update copyright years
segment.cc 12.2 KB 3661   2 years Peter update copyright years
smart_ptr.cc 1.3 KB 2919   7 years Peter update copyright years
smith_waterman.cc 1.8 KB 3209   6 years Peter add missing source file and fix compilation error --without-samtools
smoother.cc 1.8 KB 3550   3 years Peter Update copyright years. Happy New Year
spearman.cc 4.7 KB 2919   7 years Peter update copyright years
split.cc 2.4 KB 2881   7 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
statistics.cc 12.8 KB 3792   7 months Peter update copyright years
stream_redirect.cc 3.7 KB 2919   7 years Peter update copyright years
subset_generator.cc 11.3 KB 2919   7 years Peter update copyright years
Suite.cc 4.1 KB 3846   2 months Peter avoid compiler warning about ignoring return value from chdir
Suite.h 21.8 KB 3846   2 months Peter avoid compiler warning about ignoring return value from chdir
svd.cc 3.6 KB 2919   7 years Peter update copyright years
svm.cc 4.6 KB 2919   7 years Peter update copyright years
svm_multi_class.cc 4.9 KB 2919   7 years Peter update copyright years
target.cc 3.4 KB 2919   7 years Peter update copyright years
ttest.cc 1.7 KB 3114   6 years Peter update copyright years
tukey.cc 2.6 KB 3550   3 years Peter Update copyright years. Happy New Year
utility.cc 22.9 KB 3803   6 months Peter implement wrapper function around getcwd. closes #921.
vcf.cc 4.1 KB 3747   15 months Peter new class for an VCF entry; behaviour of default construction still …
vcf_compare.cc 1004 bytes 3759   13 months Peter refs #905. New class, VcfCompare?, to compare to VCF objects used e.g. …
vcf_file2.cc 1.1 KB 3763   13 months Peter refs #905 Some naive tests for class VcfFile?. Also add a test VCF …
vcf_file.cc 2.1 KB 3774   13 months Peter implement VcfIterator?. refs #905
vcf_header.cc 1.8 KB 3750   13 months Peter refs #905. Adding class VcfHeader? handling the header section in a VCF …
vector.cc 13.4 KB 3623   3 years Peter merge release 0.14.1 into trunk move functions 'create_gsl_vector' …
vector_expression.cc 6.1 KB 3677   2 years Peter refs #897; some tests for bug #897
version.cc 1.8 KB 3114   6 years Peter update copyright years
view.cc 4.3 KB 3661   2 years Peter update copyright years
weighted_iterator_archetype.cc 5.4 KB 3579   3 years Peter merge release 0.14 into trunk
yat_config_cblas_test.sh 1.0 KB 3114   6 years Peter update copyright years
yat_config_test.sh 1.7 KB 3800   7 months Peter allow multiple arguments in yat-config. closes #911
yat_cpp_add_flag_test.sh 1.6 KB 3114   6 years Peter update copyright years
yat_cxx_add_flag_test.sh 1.5 KB 3114   6 years Peter update copyright years
yat_have_svn_wc_test.sh 1.1 KB 3114   6 years Peter update copyright years
yat_header_assert_test.sh 1.2 KB 3825   4 months Peter closes #926 In tests call configure set CXX to the one found at …
yat_ld_add_flag_test.sh 1.6 KB 3114   6 years Peter update copyright years
yat_lt_compile_ifelse_test.sh 1.9 KB 3825   4 months Peter closes #926 In tests call configure set CXX to the one found at …
yat_lt_link_ifelse_test.sh 2.4 KB 3825   4 months Peter closes #926 In tests call configure set CXX to the one found at …
yat_lt_link_la_ifelse_test.sh 1.5 KB 3825   4 months Peter closes #926 In tests call configure set CXX to the one found at …
yat_m4_test2.sh 1.5 KB 3825   4 months Peter closes #926 In tests call configure set CXX to the one found at …
yat_m4_test.sh 1.7 KB 3825   4 months Peter closes #926 In tests call configure set CXX to the one found at …
yat_m4_with_bam_test.sh 1.4 KB 3825   4 months Peter closes #926 In tests call configure set CXX to the one found at …
yat_msg_error_test2.sh 1.2 KB 3330   5 years Peter update copyright years
yat_msg_error_test.sh 1.5 KB 3825   4 months Peter closes #926 In tests call configure set CXX to the one found at …
yat_pc_test.sh 3.1 KB 3661   2 years Peter update copyright years
yat_prog_move_if_change_test.sh 1.2 KB 3114   6 years Peter update copyright years
yat_revision_header_test.sh 1.6 KB 3825   4 months Peter closes #926 In tests call configure set CXX to the one found at …
yat_svn_release_year_test.sh 1.8 KB 3114   6 years Peter update copyright years
yat_svn_revision_test.sh 1.4 KB 3792   7 months Peter update copyright years
yat_use_libtool_tag_test.sh 1.4 KB 3330   5 years Peter update copyright years
  • Property svn:ignore set to
    .deps
    Makefile.in
    Makefile
Note: See TracBrowser for help on using the repository browser.