source: trunk/yat/omic/Makefile.am @ 3400

Last change on this file since 3400 was 3400, checked in by Peter, 4 years ago

refs #794

Deprecate configure option --without-samtools and add new option
--without-htslib that does the same thing.

Prefer variable names with htslib rather than samtools or libbam in
autotool files.

  • Property svn:eol-style set to native
  • Property svn:keywords set to Id
File size: 2.4 KB
Line 
1## $Id: Makefile.am 3400 2015-03-30 08:13:35Z peter $
2
3# Copyright (C) 2010, 2011, 2012, 2013, 2014 Peter Johansson
4#
5# This file is part of the yat library, http://dev.thep.lu.se/yat
6#
7# The yat library is free software; you can redistribute it and/or
8# modify it under the terms of the GNU General Public License as
9# published by the Free Software Foundation; either version 3 of the
10# License, or (at your option) any later version.
11#
12# The yat library is distributed in the hope that it will be useful,
13# but WITHOUT ANY WARRANTY; without even the implied warranty of
14# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
15# General Public License for more details.
16#
17# You should have received a copy of the GNU General Public License
18# along with yat. If not, see <http://www.gnu.org/licenses/>.
19
20if HAVE_HTSLIB
21yat_libyat_la_SOURCES += yat/omic/BamFile.cc
22yat_libyat_la_SOURCES += yat/omic/BamHeader.cc
23yat_libyat_la_SOURCES += yat/omic/BamPair.cc
24yat_libyat_la_SOURCES += yat/omic/BamRead.cc
25yat_libyat_la_SOURCES += yat/omic/BamReadFilter.cc
26yat_libyat_la_SOURCES += yat/omic/BamReadIterator.cc
27yat_libyat_la_SOURCES += yat/omic/BamWriteIterator.cc
28endif
29yat_libyat_la_SOURCES += yat/omic/Codon.cc
30yat_libyat_la_SOURCES += yat/omic/DNA.cc
31yat_libyat_la_SOURCES += yat/omic/GenomicPosition.cc
32yat_libyat_la_SOURCES += yat/omic/GFF.cc
33yat_libyat_la_SOURCES += yat/omic/GFF2.cc
34yat_libyat_la_SOURCES += yat/omic/GFF3.cc
35yat_libyat_la_SOURCES += yat/omic/phred.cc
36
37nobase_include_HEADERS += $(srcdir)/yat/omic/algorithm.h
38nobase_include_HEADERS += $(srcdir)/yat/omic/BamFile.h
39nobase_include_HEADERS += $(srcdir)/yat/omic/BamHeader.h
40nobase_include_HEADERS += $(srcdir)/yat/omic/BamPair.h
41nobase_include_HEADERS += $(srcdir)/yat/omic/BamPairIterator.h
42nobase_include_HEADERS += $(srcdir)/yat/omic/BamRead.h
43nobase_include_HEADERS += $(srcdir)/yat/omic/BamReadFilter.h
44nobase_include_HEADERS += $(srcdir)/yat/omic/BamReadIterator.h
45nobase_include_HEADERS += $(srcdir)/yat/omic/BamWriteIterator.h
46nobase_include_HEADERS += $(srcdir)/yat/omic/config_bam.h
47nobase_include_HEADERS += $(srcdir)/yat/omic/Codon.h
48nobase_include_HEADERS += $(srcdir)/yat/omic/DNA.h
49nobase_include_HEADERS += $(srcdir)/yat/omic/GenomicPosition.h
50nobase_include_HEADERS += $(srcdir)/yat/omic/GFF.h
51nobase_include_HEADERS += $(srcdir)/yat/omic/GFF2.h
52nobase_include_HEADERS += $(srcdir)/yat/omic/GFF3.h
53nobase_include_HEADERS += $(srcdir)/yat/omic/Pileup.h
54nobase_include_HEADERS += $(srcdir)/yat/omic/phred.h
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