source: trunk/yat/omic @ 3408

Name Size Rev Age Author Last Change
../
algorithm.h 1.9 KB 3295   5 years Peter merge release 0.12 into trunk
BamFile.cc 4.7 KB 3408   4 years Peter Implement functions to get/set free text in BamHeader?. As setting the …
BamFile.h 7.3 KB 3363   5 years Peter improve docs. refs #794
BamHeader.cc 4.9 KB 3408   4 years Peter Implement functions to get/set free text in BamHeader?. As setting the …
BamHeader.h 3.5 KB 3408   4 years Peter Implement functions to get/set free text in BamHeader?. As setting the …
BamPair.cc 1.7 KB 3176   6 years Peter closes #784. New class BamPairProxy? to finalize implementation of …
BamPair.h 2.6 KB 3176   6 years Peter closes #784. New class BamPairProxy? to finalize implementation of …
BamPairIterator.h 6.9 KB 3295   5 years Peter merge release 0.12 into trunk
BamRead.cc 10.6 KB 3398   4 years Peter refs #794 Global arrays bam_nt16_stable and bam_nt16_rev_table in …
BamRead.h 11.2 KB 3398   4 years Peter refs #794 Global arrays bam_nt16_stable and bam_nt16_rev_table in …
BamReadFilter.cc 1.2 KB 3361   5 years Peter remove superfluous namespace
BamReadFilter.h 2.3 KB 3363   5 years Peter improve docs. refs #794
BamReadIterator.cc 3.0 KB 3362   5 years Peter avoid temp variable. refs #794
BamReadIterator.h 4.0 KB 3360   5 years Peter update copyright years
BamWriteIterator.cc 1.2 KB 3114   6 years Peter update copyright years
BamWriteIterator.h 2.4 KB 3147   6 years Peter add missing public
Codon.cc 4.7 KB 3330   5 years Peter update copyright years
Codon.h 3.8 KB 3114   6 years Peter update copyright years
config_bam.h 2.0 KB 3360   5 years Peter update copyright years
DNA.cc 2.8 KB 2881   7 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
DNA.h 4.3 KB 3114   6 years Peter update copyright years
GenomicPosition.cc 2.1 KB 2919   7 years Peter update copyright years
GenomicPosition.h 3.3 KB 3114   6 years Peter update copyright years
GFF2.cc 1.2 KB 2919   7 years Peter update copyright years
GFF2.h 1.1 KB 3114   6 years Peter update copyright years
GFF3.cc 1.1 KB 2919   7 years Peter update copyright years
GFF3.h 1.1 KB 3114   6 years Peter update copyright years
GFF.cc 3.6 KB 2881   7 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
GFF.h 3.3 KB 3114   6 years Peter update copyright years
Makefile 786 bytes 2824   7 years Peter remove intermediate libraries. Makefiles in corresponding …
Makefile.am 2.4 KB 3400   4 years Peter refs #794 Deprecate configure option --without-samtools and add new …
phred.cc 984 bytes 3325   5 years Peter new functions phred and phred_inv that calculate phred scaled …
phred.h 1.2 KB 3326   5 years Peter use same variable name (p) in docs as in argument list
Pileup.h 8.5 KB 3336   5 years Peter closes #816
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