source: trunk/yat/utility @ 3393

Name Size Rev Age Author Last Change
../
Aligner.cc 5.9 KB 3342   5 years Peter merge 0.12.2 into trunk
Aligner.h 9.3 KB 3336   5 years Peter closes #816
Alignment.cc 2.3 KB 2881   7 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
Alignment.h 4.1 KB 3210   5 years Peter update copyright years
boost_exception_ptr.h 13.2 KB 3047   6 years Peter add missing Id tag
Cigar.h 3.0 KB 3350   5 years Peter Make configure htslib aware. Header detection changed to look for …
CigarIterator.h 3.8 KB 3385   5 years Peter refs #803
ColumnStream.cc 3.5 KB 3330   5 years Peter update copyright years
ColumnStream.h 2.4 KB 3330   5 years Peter update copyright years
CommandLine.cc 7.0 KB 3114   6 years Peter update copyright years
CommandLine.h 7.2 KB 3188   5 years Peter merge patch release 0.11.2
concept_check.h 7.3 KB 3393   5 years Peter refs #803 The std::random_access_iterator promises that iterator …
config_public.h.in 2.6 KB 3350   5 years Peter Make configure htslib aware. Header detection changed to look for …
Container2DIterator.h 3.6 KB 3393   5 years Peter refs #803 The std::random_access_iterator promises that iterator …
DataIterator.h 3.4 KB 3386   5 years Peter remove trailing spaces
DataWeight.cc 1.9 KB 2919   7 years Peter update copyright years
DataWeight.h 2.9 KB 2119   10 years Peter converted files to utf-8. fixes #577
DataWeightProxy.h 4.5 KB 3295   5 years Peter merge release 0.12 into trunk
Deleter.cc 995 bytes 2881   7 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
Deleter.h 1.7 KB 2858   7 years Peter closes #725
deprecate.h 1.8 KB 3295   5 years Peter merge release 0.12 into trunk
Exception.cc 1.6 KB 2919   7 years Peter update copyright years
Exception.h 2.6 KB 2526   8 years Peter update copyright years
FileUtil.cc 2.8 KB 2837   7 years Peter avoid ancient inclusion guards around '#include <config.h>'
FileUtil.h 3.3 KB 2125   10 years Peter fixes #575 - allow copy of FileUtil?
GetlineIterator.cc 1.5 KB 3330   5 years Peter update copyright years
GetlineIterator.h 2.7 KB 3210   5 years Peter update copyright years
Index.cc 2.1 KB 2919   7 years Peter update copyright years
Index.h 2.5 KB 2119   10 years Peter converted files to utf-8. fixes #577
iterator_traits.h 11.2 KB 3322   5 years Peter change name of test function to more descriptive …
KernelMatrix.h 5.6 KB 3190   5 years Peter new class KernelMatrix?. closes #381
KernelPCA.cc 2.2 KB 2919   7 years Peter update copyright years
KernelPCA.h 2.7 KB 2324   9 years Peter new class KernelPCA. closes #639
kNNI.cc 2.8 KB 2919   7 years Peter update copyright years
kNNI.h 2.3 KB 2119   10 years Peter converted files to utf-8. fixes #577
Makefile 786 bytes 2824   7 years Peter remove intermediate libraries. Makefiles in corresponding …
Makefile.am 4.2 KB 3346   5 years Peter first version of Scheduler class. refs #800.
Matrix.cc 12.7 KB 2881   7 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
Matrix.h 15.3 KB 2735   7 years Peter fix matrix test and add new function trace
MatrixWeighted.cc 5.7 KB 2992   7 years Peter set svndigest:ignore proprty to reflect when files were initially …
MatrixWeighted.h 6.6 KB 2992   7 years Peter set svndigest:ignore proprty to reflect when files were initially …
merge.h 9.2 KB 3225   5 years Peter make code more readable
MergeIterator.h 5.3 KB 3389   5 years Peter docs
NNI.cc 3.1 KB 2919   7 years Peter update copyright years
NNI.h 4.9 KB 2119   10 years Peter converted files to utf-8. fixes #577
Option.cc 3.0 KB 2919   7 years Peter update copyright years
Option.h 3.7 KB 2384   9 years Peter updating copyright years
OptionArg.h 4.7 KB 3114   6 years Peter update copyright years
OptionFile.cc 2.5 KB 3114   6 years Peter update copyright years
OptionFile.h 2.5 KB 2119   10 years Peter converted files to utf-8. fixes #577
OptionHelp.cc 1.7 KB 2919   7 years Peter update copyright years
OptionHelp.h 2.8 KB 2119   10 years Peter converted files to utf-8. fixes #577
OptionInFile.cc 1.5 KB 2919   7 years Peter update copyright years
OptionInFile.h 2.1 KB 2121   10 years Peter updating copyrights to uniform encoding in them.
OptionOutFile.cc 1.5 KB 2919   7 years Peter update copyright years
OptionOutFile.h 2.1 KB 3330   5 years Peter update copyright years
OptionSwitch.cc 1.9 KB 2919   7 years Peter update copyright years
OptionSwitch.h 2.0 KB 2119   10 years Peter converted files to utf-8. fixes #577
OstreamIterator.h 3.6 KB 3154   6 years Peter Happy New 2014
PCA.cc 3.1 KB 2919   7 years Peter update copyright years
PCA.h 3.2 KB 2382   9 years Peter merged patch release 0.6.3 into trunk.
Queue.h 4.2 KB 3223   5 years Peter add pointer to boost::lockfree
Range.h 5.3 KB 3259   5 years Peter deprecated class Range. closes #786
Scheduler.cc 3.7 KB 3349   5 years Peter avoid having a std::set just to count number of jobs. refs #800
Scheduler.h 4.4 KB 3349   5 years Peter avoid having a std::set just to count number of jobs. refs #800
Segment.h 5.1 KB 2358   9 years Peter move most of SegmentSet? impl to a base class SegmentTree? and implement …
SegmentMap.h 1.6 KB 2992   7 years Peter set svndigest:ignore proprty to reflect when files were initially …
SegmentSet.h 5.2 KB 3360   5 years Peter update copyright years
SegmentTree.h 10.0 KB 3114   6 years Peter update copyright years
SmartPtr.h 3.5 KB 3330   5 years Peter update copyright years
SmithWaterman.cc 2.5 KB 3212   5 years Peter move Cigar defines to a separate file
SmithWaterman.h 4.4 KB 3391   5 years Peter document requirements in SmithWaterman?. refs #803
sort_index.h 7.0 KB 3392   5 years Peter refs #803. sort_index
split.cc 1.6 KB 2881   7 years Peter Define PP variables in config.h rather than in CPPFLAGS. Include …
split.h 1.8 KB 2898   7 years Peter dox typo
stl_utility.cc 1.3 KB 2919   7 years Peter update copyright years
stl_utility.h 23.5 KB 3295   5 years Peter merge release 0.12 into trunk
StreamRedirect.h 6.4 KB 2061   10 years Peter removed include not needed
StrideIterator.h 4.3 KB 3393   5 years Peter refs #803 The std::random_access_iterator promises that iterator …
SVD.cc 3.0 KB 2919   7 years Peter update copyright years
SVD.h 3.6 KB 2119   10 years Peter converted files to utf-8. fixes #577
TypeInfo.cc 1.8 KB 2919   7 years Peter update copyright years
TypeInfo.h 2.6 KB 2119   10 years Peter converted files to utf-8. fixes #577
utility.cc 4.8 KB 3295   5 years Peter merge release 0.12 into trunk
utility.h 14.0 KB 3297   5 years Peter fix mess up caused in latest merge (r3295).
Vector.cc 5.2 KB 3210   5 years Peter update copyright years
Vector.h 4.8 KB 3101   6 years Peter remove forward declaration not needed (class matrix was renamed almost …
VectorBase.cc 5.1 KB 2992   7 years Peter set svndigest:ignore proprty to reflect when files were initially …
VectorBase.h 7.5 KB 2992   7 years Peter set svndigest:ignore proprty to reflect when files were initially …
VectorConstView.cc 2.6 KB 3114   6 years Peter update copyright years
VectorConstView.h 3.6 KB 2992   7 years Peter set svndigest:ignore proprty to reflect when files were initially …
VectorMutable.cc 4.0 KB 2992   7 years Peter set svndigest:ignore proprty to reflect when files were initially …
VectorMutable.h 5.6 KB 2992   7 years Peter set svndigest:ignore proprty to reflect when files were initially …
VectorView.cc 3.3 KB 3114   6 years Peter update copyright years
VectorView.h 6.0 KB 2992   7 years Peter set svndigest:ignore proprty to reflect when files were initially …
version.cc 1.2 KB 2919   7 years Peter update copyright years
version.h 2.3 KB 2992   7 years Peter set svndigest:ignore proprty to reflect when files were initially …
WeightedIterator.h 4.9 KB 2375   9 years Peter improve docs for WeightedIterator? and DataWeightProxy? and add some …
WeightIterator.h 3.5 KB 3330   5 years Peter update copyright years
WeNNI.cc 2.9 KB 2919   7 years Peter update copyright years
WeNNI.h 2.7 KB 2526   8 years Peter update copyright years
yat_assert.h 2.3 KB 3188   5 years Peter merge patch release 0.11.2
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