Changeset 3792


Ignore:
Timestamp:
Apr 12, 2019, 9:15:09 AM (5 months ago)
Author:
Peter
Message:

update copyright years

Location:
trunk
Files:
61 edited

Legend:

Unmodified
Added
Removed
  • trunk/NEWS

    r3784 r3792  
    472472Copyright (C) 2010, 2011 Peter Johansson
    473473Copyright (C) 2012 Jari Häkkinen, Peter Johansson
    474 Copyright (C) 2013, 2014, 2015, 2016, 2017, 2018 Peter Johansson
     474Copyright (C) 2013, 2014, 2015, 2016, 2017, 2018, 2019 Peter Johansson
    475475
    476476This file is part of yat library, http://dev.thep.lu.se/yat
  • trunk/README

    r3763 r3792  
    241241Copyright (C) 2004 Jari Häkkinen
    242242Copyright (C) 2006, 2007, 2008 Jari Häkkinen, Peter Johansson
    243 Copyright (C) 2009, 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017 Peter Johansson
     243Copyright (C) 2009, 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018 Peter Johansson
    244244
    245245This file is part of yat library, http://dev.thep.lu.se/yat
  • trunk/build_support/Makefile.am

    r3716 r3792  
    11## $Id$
    22
    3 # Copyright (C) 2008, 2009, 2010, 2011, 2012, 2013, 2014, 2016 Peter Johansson
     3# Copyright (C) 2008, 2009, 2010, 2011, 2012, 2013, 2014, 2016, 2017 Peter Johansson
    44#
    55# This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/build_support/yat-config.in

    r3716 r3792  
    22
    33# Copyright (C) 2008 Jari Häkkinen, Peter Johansson
    4 # Copyright (C) 2009, 2010, 2011, 2012, 2013, 2015, 2016 Peter Johansson
     4# Copyright (C) 2009, 2010, 2011, 2012, 2013, 2015, 2016, 2017 Peter Johansson
    55#
    66# This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/configure.ac

    r3768 r3792  
    1010# Copyright (C) 2010, 2011 Peter Johansson
    1111# Copyright (C) 2012 Jari Häkkinen, Peter Johansson
    12 # Copyright (C) 2013, 2014, 2015, 2016, 2017 Peter Johansson
     12# Copyright (C) 2013, 2014, 2015, 2016, 2017, 2018 Peter Johansson
    1313#
    1414# This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/doc/build_tool.doxygen

    r3769 r3792  
    22//
    33// Copyright (C) 2008 Jari Häkkinen, Peter Johansson
    4 // Copyright (C) 2009, 2010, 2011, 2013, 2017 Peter Johansson
     4// Copyright (C) 2009, 2010, 2011, 2013, 2017, 2018 Peter Johansson
    55//
    66// This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/doc/doxygen.config.in

    r3775 r3792  
    66# Copyright (C) 2006, 2007 Jari Häkkinen, Peter Johansson
    77# Copyright (C) 2008 Jari Häkkinen, Peter Johansson, Markus Ringnér
    8 # Copyright (C) 2009, 2010, 2012, 2014, 2017 Peter Johansson
     8# Copyright (C) 2009, 2010, 2012, 2014, 2017, 2018 Peter Johansson
    99#
    1010# This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/m4/yat_cxx11.m4

    r3786 r3792  
    2121# COPYLEFT
    2222#
    23 #   Copyright (C) 2017 Peter Johansson
     23#   Copyright (C) 2017, 2018, 2019 Peter Johansson
    2424#
    2525#   This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/test/Makefile.am

    r3767 r3792  
    55# Copyright (C) 2005 Jari Häkkinen, Peter Johansson
    66# Copyright (C) 2006, 2007, 2008 Jari Häkkinen, Peter Johansson, Markus Ringnér
    7 # Copyright (C) 2009, 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017 Peter Johansson
     7# Copyright (C) 2009, 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018 Peter Johansson
    88#
    99# This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/test/Suite.h

    r3723 r3792  
    66/*
    77  Copyright (C) 2008 Jari Häkkinen, Peter Johansson
    8   Copyright (C) 2009, 2010, 2011, 2013, 2014, 2015, 2016 Peter Johansson
     8  Copyright (C) 2009, 2010, 2011, 2013, 2014, 2015, 2016, 2018 Peter Johansson
    99
    1010  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/test/negative_binomial.cc

    r3788 r3792  
    22
    33/*
    4   Copyright (C) 2017 Peter Johansson
     4  Copyright (C) 2017, 2019 Peter Johansson
    55
    66  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/test/statistics.cc

    r3745 r3792  
    66  Copyright (C) 2006 Jari Häkkinen, Peter Johansson, Markus Ringnér
    77  Copyright (C) 2007, 2008, 2009 Jari Häkkinen, Peter Johansson
    8   Copyright (C) 2010, 2011, 2012, 2013, 2014, 2016 Peter Johansson
     8  Copyright (C) 2010, 2011, 2012, 2013, 2014, 2016, 2018 Peter Johansson
    99
    1010  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/test/utility.cc

    r3746 r3792  
    44  Copyright (C) 2006 Jari Häkkinen, Markus Ringnér
    55  Copyright (C) 2007, 2008 Jari Häkkinen, Peter Johansson
    6   Copyright (C) 2009, 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017 Peter Johansson
     6  Copyright (C) 2009, 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018 Peter Johansson
    77
    88  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/test/yat_svn_revision_test.sh

    r3783 r3792  
    22# $Id$
    33#
    4 # Copyright (C) 2011, 2012, 2013 Peter Johansson
     4# Copyright (C) 2011, 2012, 2013, 2019 Peter Johansson
    55#
    66# This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/omic/BamFile.cc

    r3752 r3792  
    22
    33/*
    4   Copyright (C) 2012, 2013, 2014, 2015, 2016, 2017 Peter Johansson
     4  Copyright (C) 2012, 2013, 2014, 2015, 2016, 2017, 2018 Peter Johansson
    55
    66  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/omic/BamFile.h

    r3752 r3792  
    55
    66/*
    7   Copyright (C) 2012, 2013, 2014, 2016, 2017 Peter Johansson
     7  Copyright (C) 2012, 2013, 2014, 2016, 2017, 2018 Peter Johansson
    88
    99  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/omic/BamHeader.cc

    r3752 r3792  
    22
    33/*
    4   Copyright (C) 2012, 2013, 2014, 2015, 2016, 2017 Peter Johansson
     4  Copyright (C) 2012, 2013, 2014, 2015, 2016, 2017, 2018 Peter Johansson
    55
    66  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/omic/BamHeader.h

    r3752 r3792  
    55
    66/*
    7   Copyright (C) 2012, 2013, 2014, 2015, 2016, 2017 Peter Johansson
     7  Copyright (C) 2012, 2013, 2014, 2015, 2016, 2017, 2018 Peter Johansson
    88
    99  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/omic/BamPair.cc

    r3752 r3792  
    22
    33/*
    4   Copyright (C) 2014 Peter Johansson
     4  Copyright (C) 2014, 2018 Peter Johansson
    55
    66  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/omic/BamPair.h

    r3752 r3792  
    55
    66/*
    7   Copyright (C) 2014 Peter Johansson
     7  Copyright (C) 2014, 2018 Peter Johansson
    88
    99  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/omic/BamPairIterator.h

    r3752 r3792  
    55
    66/*
    7   Copyright (C) 2014, 2016 Peter Johansson
     7  Copyright (C) 2014, 2016, 2018 Peter Johansson
    88
    99  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/omic/BamReadFilter.cc

    r3752 r3792  
    22
    33/*
    4   Copyright (C) 2013, 2014 Peter Johansson
     4  Copyright (C) 2013, 2014, 2018 Peter Johansson
    55
    66  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/omic/BamReadFilter.h

    r3752 r3792  
    55
    66/*
    7   Copyright (C) 2013, 2014 Peter Johansson
     7  Copyright (C) 2013, 2014, 2018 Peter Johansson
    88
    99  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/omic/BamReadIterator.cc

    r3752 r3792  
    22
    33/*
    4   Copyright (C) 2012, 2013, 2014, 2017 Peter Johansson
     4  Copyright (C) 2012, 2013, 2014, 2017, 2018 Peter Johansson
    55
    66  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/omic/BamReadIterator.h

    r3752 r3792  
    55
    66/*
    7   Copyright (C) 2012, 2013, 2014, 2017 Peter Johansson
     7  Copyright (C) 2012, 2013, 2014, 2017, 2018 Peter Johansson
    88
    99  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/omic/BamWriteIterator.cc

    r3752 r3792  
    22
    33/*
    4   Copyright (C) 2012, 2013, 2017 Peter Johansson
     4  Copyright (C) 2012, 2013, 2017, 2018 Peter Johansson
    55
    66  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/omic/BamWriteIterator.h

    r3752 r3792  
    55
    66/*
    7   Copyright (C) 2012, 2013, 2017 Peter Johansson
     7  Copyright (C) 2012, 2013, 2017, 2018 Peter Johansson
    88
    99  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/omic/DnaComplementer.cc

    r3757 r3792  
    11// $Id$
    22//
    3 // Copyright (C) 2016 Peter Johansson
     3// Copyright (C) 2016, 2018 Peter Johansson
    44//
    55// This program is free software; you can redistribute it and/or modify
  • trunk/yat/omic/DnaComplementer.h

    r3757 r3792  
    44// $Id$
    55//
    6 // Copyright (C) 2016, 2017 Peter Johansson
     6// Copyright (C) 2016, 2017, 2018 Peter Johansson
    77//
    88// This program is free software; you can redistribute it and/or modify
  • trunk/yat/omic/Fasta.cc

    r3758 r3792  
    11// $Id$
    22//
    3 // Copyright (C) 2016 Peter Johansson
     3// Copyright (C) 2016, 2018 Peter Johansson
    44//
    55// This program is free software; you can redistribute it and/or modify
  • trunk/yat/omic/Fasta.h

    r3758 r3792  
    44// $Id$
    55//
    6 // Copyright (C) 2016, 2017 Peter Johansson
     6// Copyright (C) 2016, 2017, 2018 Peter Johansson
    77//
    88// This program is free software; you can redistribute it and/or modify
  • trunk/yat/omic/GenomicPosition.cc

    r3756 r3792  
    22
    33/*
    4   Copyright (C) 2010, 2011, 2012 Peter Johansson
     4  Copyright (C) 2010, 2011, 2012, 2018 Peter Johansson
    55
    66  The yat library is free software; you can redistribute it and/or
  • trunk/yat/omic/GenomicPosition.h

    r3756 r3792  
    55
    66/*
    7   Copyright (C) 2010, 2012, 2013 Peter Johansson
     7  Copyright (C) 2010, 2012, 2013, 2018 Peter Johansson
    88
    99  The yat library is free software; you can redistribute it and/or
  • trunk/yat/omic/Makefile.am

    r3774 r3792  
    11## $Id$
    22
    3 # Copyright (C) 2010, 2011, 2012, 2013, 2014, 2015, 2016 Peter Johansson
     3# Copyright (C) 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2018 Peter Johansson
    44#
    55# This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/omic/Pileup.h

    r3758 r3792  
    55
    66/*
    7   Copyright (C) 2014, 2016, 2017 Peter Johansson
     7  Copyright (C) 2014, 2016, 2017, 2018 Peter Johansson
    88
    99  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/omic/VCF.cc

    r3790 r3792  
    22
    33/*
    4   Copyright (C) 2018 Peter Johansson
     4  Copyright (C) 2018, 2019 Peter Johansson
    55
    66  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/omic/VCF.h

    r3790 r3792  
    55
    66/*
    7   Copyright (C) 2018 Peter Johansson
     7  Copyright (C) 2018, 2019 Peter Johansson
    88
    99  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/omic/VcfFile.cc

    r3789 r3792  
    22
    33/*
    4   Copyright (C) 2018 Peter Johansson
     4  Copyright (C) 2018, 2019 Peter Johansson
    55
    66  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/omic/VcfFile.h

    r3789 r3792  
    55
    66/*
    7   Copyright (C) 2018 Peter Johansson
     7  Copyright (C) 2018, 2019 Peter Johansson
    88
    99  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/omic/algorithm.h

    r3753 r3792  
    55
    66/*
    7   Copyright (C) 2012, 2013, 2014, 2016, 2017 Peter Johansson
     7  Copyright (C) 2012, 2013, 2014, 2016, 2017, 2018 Peter Johansson
    88
    99  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/omic/config_bam.h

    r3753 r3792  
    44// $Id$
    55//
    6 // Copyright (C) 2012, 2013, 2014, 2015, 2016 Peter Johansson
     6// Copyright (C) 2012, 2013, 2014, 2015, 2016, 2018 Peter Johansson
    77//
    88// This program is free software; you can redistribute it and/or modify
  • trunk/yat/random/copy_k_of_n.h

    r3788 r3792  
    55
    66/*
    7   Copyright (C) 2015 Peter Johansson
     7  Copyright (C) 2015, 2019 Peter Johansson
    88
    99  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/random/random.cc

    r3776 r3792  
    33/*
    44  Copyright (C) 2005, 2006, 2007, 2008 Jari Häkkinen, Peter Johansson
    5   Copyright (C) 2009, 2011, 2012, 2013, 2015, 2016, 2017 Peter Johansson
     5  Copyright (C) 2009, 2011, 2012, 2013, 2015, 2016, 2017, 2018 Peter Johansson
    66
    77  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/statistics/Makefile.am

    r3723 r3792  
    33# Copyright (C) 2005 Jari Häkkinen, Peter Johansson
    44# Copyright (C) 2006, 2007, 2008 Jari Häkkinen, Peter Johansson, Markus Ringnér
    5 # Copyright (C) 2009, 2010, 2011, 2012, 2013, 2016, 2017 Peter Johansson
     5# Copyright (C) 2009, 2010, 2011, 2012, 2013, 2016, 2017, 2018 Peter Johansson
    66#
    77# This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/statistics/utility.cc

    r3745 r3792  
    55  Copyright (C) 2005 Peter Johansson
    66  Copyright (C) 2006, 2007, 2008 Jari Häkkinen, Peter Johansson
    7   Copyright (C) 2009, 2011, 2012 Peter Johansson
     7  Copyright (C) 2009, 2011, 2012, 2018 Peter Johansson
    88
    99  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/statistics/utility.h

    r3745 r3792  
    99  Copyright (C) 2006 Jari Häkkinen, Peter Johansson, Markus Ringnér
    1010  Copyright (C) 2007, 2008 Jari Häkkinen, Peter Johansson
    11   Copyright (C) 2009, 2010, 2011, 2013, 2014, 2016 Peter Johansson
     11  Copyright (C) 2009, 2010, 2011, 2013, 2014, 2016, 2018 Peter Johansson
    1212
    1313  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/utility/BasicQueue.h

    r3751 r3792  
    44// $Id$
    55//
    6 // Copyright (C) 2017 Peter Johansson
     6// Copyright (C) 2017, 2018 Peter Johansson
    77//
    88// This program is free software; you can redistribute it and/or modify
  • trunk/yat/utility/Cigar.h

    r3751 r3792  
    55
    66/*
    7   Copyright (C) 2014, 2015 Peter Johansson
     7  Copyright (C) 2014, 2015, 2018 Peter Johansson
    88
    99  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/utility/CigarIterator.h

    r3751 r3792  
    55
    66/*
    7   Copyright (C) 2014, 2015, 2016 Peter Johansson
     7  Copyright (C) 2014, 2015, 2016, 2018 Peter Johansson
    88
    99  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/utility/CommandLine.cc

    r3781 r3792  
    44  Copyright (C) 2007 Jari Häkkinen, Peter Johansson, Markus Ringnér
    55  Copyright (C) 2008 Jari Häkkinen, Peter Johansson
    6   Copyright (C) 2009, 2010, 2011, 2012, 2013 Peter Johansson
     6  Copyright (C) 2009, 2010, 2011, 2012, 2013, 2018 Peter Johansson
    77
    88  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/utility/Matrix.h

    r3735 r3792  
    99  Copyright (C) 2005, 2006 Jari Häkkinen, Peter Johansson, Markus Ringnér
    1010  Copyright (C) 2007, 2008, 2009 Jari Häkkinen, Peter Johansson
    11   Copyright (C) 2012, 2017 Peter Johansson
     11  Copyright (C) 2012, 2017, 2018 Peter Johansson
    1212
    1313  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/utility/MergeIterator.h

    r3729 r3792  
    55
    66/*
    7   Copyright (C) 2013, 2015, 2016 Peter Johansson
     7  Copyright (C) 2013, 2015, 2016, 2018 Peter Johansson
    88
    99  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/utility/PCA.cc

    r3787 r3792  
    77  Copyright (C) 2006 Jari Häkkinen
    88  Copyright (C) 2007, 2008 Jari Häkkinen, Peter Johansson
    9   Copyright (C) 2010, 2012 Peter Johansson
     9  Copyright (C) 2010, 2012, 2018, 2019 Peter Johansson
    1010
    1111  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/utility/PCA.h

    r3736 r3792  
    1010  Copyright (C) 2006 Jari Häkkinen
    1111  Copyright (C) 2007, 2008 Jari Häkkinen, Peter Johansson
    12   Copyright (C) 2010 Peter Johansson
     12  Copyright (C) 2010, 2018 Peter Johansson
    1313
    1414  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/utility/PriorityQueue.h

    r3751 r3792  
    44// $Id$
    55//
    6 // Copyright (C) 2015, 2016, 2017 Peter Johansson
     6// Copyright (C) 2015, 2016, 2017, 2018 Peter Johansson
    77//
    88// This program is free software; you can redistribute it and/or modify
  • trunk/yat/utility/Queue.h

    r3751 r3792  
    44// $Id$
    55//
    6 // Copyright (C) 2013, 2014, 2016, 2017 Peter Johansson
     6// Copyright (C) 2013, 2014, 2016, 2017, 2018 Peter Johansson
    77//
    88// This program is free software; you can redistribute it and/or modify
  • trunk/yat/utility/SVD.h

    r3748 r3792  
    1010  Copyright (C) 2006 Jari Häkkinen, Markus Ringnér
    1111  Copyright (C) 2007, 2008 Jari Häkkinen, Peter Johansson
     12  Copyright (C) 2018 Peter Johansson
    1213
    1314  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/utility/concept_check.h

    r3788 r3792  
    55
    66/*
    7   Copyright (C) 2010, 2011, 2013, 2015, 2016, 2017 Peter Johansson
     7  Copyright (C) 2010, 2011, 2013, 2015, 2016, 2017, 2018, 2019 Peter Johansson
    88
    99  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/utility/config_public.h.in

    r3730 r3792  
    66/*
    77  Copyright (C) 2008 Jari Häkkinen, Peter Johansson
    8   Copyright (C) 2009, 2011, 2013, 2014, 2015, 2017 Peter Johansson
     8  Copyright (C) 2009, 2011, 2013, 2014, 2015, 2017, 2018 Peter Johansson
    99
    1010  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/utility/stl_utility.h

    r3779 r3792  
    99  Copyright (C) 2006 Jari Häkkinen
    1010  Copyright (C) 2007, 2008 Jari Häkkinen, Peter Johansson
    11   Copyright (C) 2009, 2010, 2011, 2012, 2013, 2014, 2015, 2016 Peter Johansson
     11  Copyright (C) 2009, 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2018 Peter Johansson
    1212
    1313  This file is part of the yat library, http://dev.thep.lu.se/yat
  • trunk/yat/utility/utility.cc

    r3746 r3792  
    44  Copyright (C) 2005, 2006 Jari Häkkinen, Markus Ringnér
    55  Copyright (C) 2007, 2008 Jari Häkkinen, Peter Johansson
    6   Copyright (C) 2010, 2012, 2013, 2014, 2017 Peter Johansson
     6  Copyright (C) 2010, 2012, 2013, 2014, 2017, 2018 Peter Johansson
    77
    88  This file is part of the yat library, http://dev.thep.lu.se/yat
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