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Diff Rev Age Author Log Message
(edit) @3330   6 years Peter update copyright years
(edit) @3329   6 years Peter new class CigarIterator? that can be used to (surprise) iterate over a …
(edit) @3328   6 years Peter avoid temporary variables; prefer initialization. refs #806
(edit) @3327   6 years Peter redefine Pileup::const_iterator so it avoids reads that do not overlap …
(edit) @3326   6 years Peter use same variable name (p) in docs as in argument list
(edit) @3325   6 years Peter new functions phred and phred_inv that calculate phred scaled …
(edit) @3324   6 years Peter grammar in comment
(edit) @3323   6 years Peter prefer strcmp over generic std::equal
(edit) @3322   6 years Peter change name of test function to more descriptive …
(edit) @3321   6 years Peter fixes bug #815
(edit) @3320   6 years Peter speedup. assume Distance is symmetric. closes #814
(edit) @3319   6 years Peter avoid long line
(edit) @3318   6 years Peter closes #813
(edit) @3317   6 years Peter refs #806 add test for Pileup class
(edit) @3316   6 years Peter remove trailing ws
(edit) @3315   6 years Peter added inclusion of boost iterator_facade header. refs #803.
(edit) @3314   6 years Peter new test class: weighted_iterator_archetype. refs #803
(edit) @3313   6 years Peter Correct syntax so it works in VPATH build. Correct yat-hello source so …
(edit) @3312   6 years Peter correct lazycheck deps
(edit) @3311   6 years Peter append EXTRA_DIST with some m4 files that were missing in dist (only …
(edit) @3310   6 years Peter a first version of new class Pileup. refs #806
(edit) @3309   6 years Peter fixes #811
(edit) @3308   6 years Peter fixed two more glitches in the new version of 'make …
(edit) @3307   6 years Peter bump version to 0.12.2pre
(edit) @3306   6 years Peter merge ptach release 0.12.1 into trunk
(edit) @3305   6 years Peter tagging version 0.12.1
(edit) @3304   6 years Peter Preparing release 0.12.1
(edit) @3303   6 years Peter New macro YAT_FUNC_BAM_CALEND, which checks if function bam_calend is …
(edit) @3302   6 years Peter add test for BamRead::end(). Use samtools' bam_calend if …
(edit) @3301   6 years Peter refs #810. minor corrections
(edit) @3300   6 years Peter BAM_CBACK is not #defined in older versions of bam.h. refs #810
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