source: trunk/yat/omic/BamFile.cc

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Diff Rev Age Author Log Message
(edit) @3408   4 years Peter Implement functions to get/set free text in BamHeader?. As setting the …
(edit) @3359   5 years Peter fix issues in OutBamFile::write. refs #794
(edit) @3358   5 years Peter fix how to read from a hts_itr_t. refs #794
(edit) @3357   5 years Peter refs #794. implement open and close functions
(edit) @3353   5 years Peter refs #794. First version that compiles against htslib. Alibi …
(edit) @3350   5 years Peter Make configure htslib aware. Header detection changed to look for …
(edit) @3166   5 years Peter throw OutBamFile::error when OutBamFile::write fails. closes #778
(edit) @3162   5 years Peter refs #778. samwrite returns -1 if file is closed, so correct code to …
(edit) @3160   5 years Peter closes #775
(edit) @3080   6 years Peter improve erro message
(edit) @3079   6 years Peter throw if creating bam_header fails, e.g. if file is not a bam. fixes #767
(edit) @3048   6 years Peter avoid cassert in header file
(edit) @2993   6 years Peter conform GPL header to same style as in other yat files
(edit) @2983   6 years Peter fixes #751. throw if OutBamFile::write fails
(edit) @2943   6 years Peter merge release 0.10 into trunk
(edit) @2897   7 years Peter prefer throwing yat::utility::runtime_error. refs #729
(edit) @2895   7 years Peter add two tests for bam functionality
(add) @2883   7 years Peter New classes to wrap around functionality provided by samtools. refs #729
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