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Ticket Summary Status Owner Type Priority Milestone
#320 templatize classifier::Kernel new peter discussion critical yat 0.x+
#92 EnsembleValidator new peter request major yat 0.x+
#150 microarray::DataSet new peter discussion major yat 0.x+
#175 Extend tests for ensembles new markus request major yat 0.x+
#181 add a class for SAM new peter request major yat 0.x+
#202 utility::matrix has internal support for const matrix views but there is no interface to create a const matrix view new jari enhancement major yat 0.x+
#215 weight information in InputRanker new peter enhancement major yat 0.x+
#216 PCA is lacking functionality new jari enhancement major yat 0.x+
#258 Permutation test new peter enhancement major yat 0.x+
#270 Support for different methods to aggregate classifiers in EnsembleBuilder new markus discussion major yat 0.x+
#296 non-random permutation test new peter request major yat 0.x+
#302 allow different normalizations in PCA new jari enhancement major yat 0.x+
#346 Generalize NNI to utilize different metrics new jari enhancement major yat 0.x+
#357 Function to calculate accuracy new markus request major yat 0.x+
#364 Histogram cumulative distribution new peter enhancement major yat 0.x+
#397 Arithmetic for DataWeight new jari discussion major yat 0.x+
#433 predict in regression::Local new peter enhancement major yat 0.x+
#605 Add support to the BASE project BFS format new jari defect major yat 0.x+
#643 Circular Iterator Adaptor new jari request major yat 0.x+
#673 Chromosomes hard-wired in GenomicPosition new peter discussion major yat 0.x+
#710 speed up Kendall::score using NlogN algorithm new peter enhancement major yat 0.x+
#711 speed up exact p-value for small n in Kendall new peter enhancement major yat 0.x+
#773 Weighted version of Binomial LRT new peter request major yat 0.x+
#774 iterate bam file over set of regions new peter discussion major yat 0.x+
#782 A less memory hungry Aligner new peter discussion major yat 0.x+
#798 output sorted bam buffer new peter request major yat 0.x+
#825 access Option from Commandline new jari request major yat 0.x+
#835 Fast Matrix Transpose new jari discussion major yat 0.x+
#848 class performing chi^2 test new peter request major yat 0.16
#854 avoid using non-standard sys/stat.h new jari discussion major yat 0.x+
#858 A proxy class between boost::random and GSL RNG new jari request major yat 0.x+
#869 class for random number from negative binomial distribution new jari request major yat 0.x+
#881 expression class for dgemv new jari discussion major yat 0.x+
#887 avoid copying in getvector new jari enhancement major yat 0.x+
#890 normalize to unity new peter request major yat 0.x+
#891 mutable BamReadIterator new peter discussion major yat 0.x+
#892 expression class for dgemm new jari request major yat 0.x+
#899 Scheduler::wait_for(int) new jari request major yat 0.x+
#900 Job creating jobs new jari request major yat 0.x+
#902 split SupervisedClassifer into weighted and non-weighted new markus discussion major yat 0.x+
#904 cxx11 features - default behaviour new jari request major yat 0.x+
#31 add Permutation test for weighted Score new peter enhancement minor yat 0.x+
#82 add BaseFileReader new jari request minor yat 0.x+
#139 Combinations of Target objects new peter request minor yat 0.x+
#141 unknown Target new peter request minor yat 0.x+
#231 read, digest, and adopt APR devel guidelines new jari enhancement minor yat 0.x+
#358 add iterators in Kernel class new peter request minor yat 0.x+
#373 Paramaterize how to calculate the average in Quantile Normalization new peter enhancement minor yat 0.x+
#382 Create an Index object from a string in Target class new peter enhancement minor yat 0.x+
#401 Weighted Quantile Normalization new peter discussion minor yat 0.x+
#422 add(first1, last1, first2) in regression::Local new peter enhancement minor yat 0.x+
#428 yat.m4 and yat-config only work when installed new jari enhancement minor yat 0.x+
#541 access to prediction on training data in EnsembleBuilder new peter request minor yat 0.x+
#552 calculate entropy of a histogram new peter request minor yat 0.x+
#690 AveragerPair::sum_xy_centered unstable new peter defect minor yat 0.x+
#732 use AC_CONFIG_MACRO_DIRS new jari request minor yat 0.x+
#765 re-implement WeightedIterator as boost:zip_iterator new jari request minor yat 0.x+
#781 reimplement Averagers as wrappers around boost::accumulators new peter discussion minor yat 0.x+
#791 lock ostreams new peter discussion minor yat 0.x+
#824 OptionVersion class new peter request minor yat 0.x+
#827 set unset and flip bits in BamRead::flag new peter discussion minor yat 0.x+
#888 is it possible to call split/getvector in load functions? new jari discussion minor yat 0.x+
#51 score object using SVM new peter request trivial yat 0.x+
#127 Use Distance::Euclidean in GaussianKernelFunction new peter enhancement trivial yat 0.x+
#400 add functions taking ranges should return object that is modified new peter enhancement trivial yat 0.x+
#618 redundancy in 'required' and dependency in Makefile.am new jari enhancement trivial yat 0.x+
#727 mention how manipulate GSL error handler in Doxygen docs new peter request trivial yat 0.x+
#801 non-standard functions new jari defect trivial yat 0.x+
#805 installed libyat linked in before local libyat new peter defect trivial yat 0.x+
#812 include autoconf macros in doxygen docs new peter discussion trivial yat 0.x+
#845 handle GSL errors gracefully in test suite new jari enhancement trivial yat 0.x+
#865 binary_weight doesn't work with proxy value type new jari defect trivial yat 0.x+
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