#320 
templatize classifier::Kernel

new

peter

discussion

critical

yat 0.x+

#92 
EnsembleValidator

new

peter

request

major

yat 0.x+

#150 
microarray::DataSet

new

peter

discussion

major

yat 0.x+

#175 
Extend tests for ensembles

new

markus

request

major

yat 0.x+

#181 
add a class for SAM

new

peter

request

major

yat 0.x+

#202 
utility::matrix has internal support for const matrix views but there is no interface to create a const matrix view

new

jari

enhancement

major

yat 0.x+

#215 
weight information in InputRanker

new

peter

enhancement

major

yat 0.x+

#216 
PCA is lacking functionality

new

jari

enhancement

major

yat 0.x+

#258 
Permutation test

new

peter

enhancement

major

yat 0.x+

#270 
Support for different methods to aggregate classifiers in EnsembleBuilder

new

markus

discussion

major

yat 0.x+

#296 
nonrandom permutation test

new

peter

request

major

yat 0.x+

#302 
allow different normalizations in PCA

new

jari

enhancement

major

yat 0.x+

#346 
Generalize NNI to utilize different metrics

new

jari

enhancement

major

yat 0.x+

#357 
Function to calculate accuracy

new

markus

request

major

yat 0.x+

#364 
Histogram cumulative distribution

new

peter

enhancement

major

yat 0.x+

#397 
Arithmetic for DataWeight

new

jari

discussion

major

yat 0.x+

#433 
predict in regression::Local

new

peter

enhancement

major

yat 0.x+

#605 
Add support to the BASE project BFS format

new

jari

defect

major

yat 0.x+

#643 
Circular Iterator Adaptor

new

jari

request

major

yat 0.x+

#673 
Chromosomes hardwired in GenomicPosition

new

peter

discussion

major

yat 0.x+

#710 
speed up Kendall::score using NlogN algorithm

new

peter

enhancement

major

yat 0.x+

#711 
speed up exact pvalue for small n in Kendall

new

peter

enhancement

major

yat 0.x+

#773 
Weighted version of Binomial LRT

new

peter

request

major

yat 0.x+

#774 
iterate bam file over set of regions

new

peter

discussion

major

yat 0.x+

#782 
A less memory hungry Aligner

new

peter

discussion

major

yat 0.x+

#798 
output sorted bam buffer

new

peter

request

major

yat 0.x+

#825 
access Option from Commandline

new

jari

request

major

yat 0.x+

#835 
Fast Matrix Transpose

new

jari

discussion

major

yat 0.x+

#848 
class performing chi^2 test

new

peter

request

major

yat 0.x+

#854 
avoid using nonstandard sys/stat.h

new

jari

discussion

major

yat 0.x+

#858 
A proxy class between boost::random and GSL RNG

new

jari

request

major

yat 0.x+

#867 
Negative Binomial Regression

assigned

peter

request

major

yat 0.15

#869 
class for random number from negative binomial distribution

new

jari

request

major

yat 0.x+

#880 
transpose(A) in matrix expression

new

jari

request

major

yat 0.15

#881 
expression class for dgemv

new

jari

discussion

major

yat 0.x+

#882 
Poissonian regression

assigned

peter

request

major

yat 0.15

#883 
Base class for multivariate regression

new

peter

request

major

yat 0.15

#885 
reuse blas_result in assignment from Matrix Expression

assigned

peter

enhancement

major

yat 0.15

#887 
avoid copying in getvector

new

jari

enhancement

major

yat 0.x+

#890 
normalize to unity

new

peter

request

major

yat 0.x+

#891 
mutable BamReadIterator

new

peter

discussion

major

yat 0.x+

#31 
add Permutation test for weighted Score

new

peter

enhancement

minor

yat 0.x+

#82 
add BaseFileReader

new

jari

request

minor

yat 0.x+

#139 
Combinations of Target objects

new

peter

request

minor

yat 0.x+

#141 
unknown Target

new

peter

request

minor

yat 0.x+

#231 
read, digest, and adopt APR devel guidelines

new

jari

enhancement

minor

yat 0.x+

#358 
add iterators in Kernel class

new

peter

request

minor

yat 0.x+

#373 
Paramaterize how to calculate the average in Quantile Normalization

new

peter

enhancement

minor

yat 0.x+

#382 
Create an Index object from a string in Target class

new

peter

enhancement

minor

yat 0.x+

#401 
Weighted Quantile Normalization

new

peter

discussion

minor

yat 0.x+

#422 
add(first1, last1, first2) in regression::Local

new

peter

enhancement

minor

yat 0.x+

#428 
yat.m4 and yatconfig only work when installed

new

jari

enhancement

minor

yat 0.x+

#541 
access to prediction on training data in EnsembleBuilder

new

peter

request

minor

yat 0.x+

#552 
calculate entropy of a histogram

new

peter

request

minor

yat 0.x+

#690 
AveragerPair::sum_xy_centered unstable

new

peter

defect

minor

yat 0.x+

#732 
use AC_CONFIG_MACRO_DIRS

new

jari

request

minor

yat 0.x+

#765 
reimplement WeightedIterator as boost:zip_iterator

new

jari

request

minor

yat 0.x+

#781 
reimplement Averagers as wrappers around boost::accumulators

new

peter

discussion

minor

yat 0.x+

#791 
lock ostreams

new

peter

discussion

minor

yat 0.x+

#824 
OptionVersion class

new

peter

request

minor

yat 0.x+

#827 
set unset and flip bits in BamRead::flag

new

peter

discussion

minor

yat 0.x+

#868 
calculate inverse of (square) matrix

assigned

peter

request

minor

yat 0.15

#888 
is it possible to call split/getvector in load functions?

new

jari

discussion

minor

yat 0.x+

#51 
score object using SVM

new

peter

request

trivial

yat 0.x+

#127 
Use Distance::Euclidean in GaussianKernelFunction

new

peter

enhancement

trivial

yat 0.x+

#400 
add functions taking ranges should return object that is modified

new

peter

enhancement

trivial

yat 0.x+

#618 
redundancy in 'required' and dependency in Makefile.am

new

jari

enhancement

trivial

yat 0.x+

#727 
mention how manipulate GSL error handler in Doxygen docs

new

peter

request

trivial

yat 0.x+

#801 
nonstandard functions

new

jari

defect

trivial

yat 0.x+

#805 
installed libyat linked in before local libyat

new

peter

defect

trivial

yat 0.x+

#812 
include autoconf macros in doxygen docs

new

peter

discussion

trivial

yat 0.x+

#845 
handle GSL errors gracefully in test suite

new

jari

enhancement

trivial

yat 0.x+

#851 
includes are not stripped correctly (sometimes)

new

peter

defect

trivial

yat 0.x+

#865 
binary_weight doesn't work with proxy value type

new

jari

defect

trivial

yat 0.x+

#866 
Queue and PriorityQueue should be refactored with common base class

new

jari

enhancement

trivial

yat 0.x+
