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Ticket Summary Status Owner Type Priority Milestone
#320 templatize classifier::Kernel new Peter discussion critical yat 0.x+
#92 EnsembleValidator new Peter request major yat 0.x+
#150 microarray::DataSet new Peter discussion major yat 0.x+
#175 Extend tests for ensembles new Markus Ringnér request major yat 0.x+
#181 add a class for SAM new Peter request major yat 0.x+
#202 utility::matrix has internal support for const matrix views but there is no interface to create a const matrix view new Jari Häkkinen enhancement major yat 0.x+
#215 weight information in InputRanker new Peter enhancement major yat 0.x+
#216 PCA is lacking functionality new Jari Häkkinen enhancement major yat 0.x+
#258 Permutation test new Peter enhancement major yat 0.x+
#270 Support for different methods to aggregate classifiers in EnsembleBuilder new Markus Ringnér discussion major yat 0.x+
#296 non-random permutation test new Peter request major yat 0.x+
#302 allow different normalizations in PCA new Jari Häkkinen enhancement major yat 0.x+
#346 Generalize NNI to utilize different metrics new Jari Häkkinen enhancement major yat 0.x+
#357 Function to calculate accuracy new Markus Ringnér request major yat 0.x+
#364 Histogram cumulative distribution new Peter enhancement major yat 0.x+
#397 Arithmetic for DataWeight new Jari Häkkinen discussion major yat 0.x+
#433 predict in regression::Local new Peter enhancement major yat 0.x+
#605 Add support to the BASE project BFS format new Jari Häkkinen defect major yat 0.x+
#643 Circular Iterator Adaptor new Jari Häkkinen request major yat 0.x+
#673 Chromosomes hard-wired in GenomicPosition new Peter discussion major yat 0.x+
#710 speed up Kendall::score using NlogN algorithm new Peter enhancement major yat 0.x+
#711 speed up exact p-value for small n in Kendall new Peter enhancement major yat 0.x+
#773 Weighted version of Binomial LRT new Peter request major yat 0.x+
#774 iterate bam file over set of regions new Peter discussion major yat 0.x+
#782 A less memory hungry Aligner new Peter discussion major yat 0.x+
#798 output sorted bam buffer new Peter request major yat 0.x+
#825 access Option from Commandline new Jari Häkkinen request major yat 0.x+
#835 Fast Matrix Transpose new Jari Häkkinen discussion major yat 0.x+
#854 avoid using non-standard sys/stat.h new Jari Häkkinen discussion major yat 0.x+
#858 A proxy class between boost::random and GSL RNG new Jari Häkkinen request major yat 0.x+
#869 class for random number from negative binomial distribution new Jari Häkkinen request major yat 0.x+
#881 expression class for dgemv new Jari Häkkinen discussion major yat 0.x+
#887 avoid copying in getvector new Jari Häkkinen enhancement major yat 0.x+
#890 normalize to unity new Peter request major yat 0.x+
#891 mutable BamReadIterator new Peter discussion major yat 0.x+
#892 expression class for dgemm new Jari Häkkinen request major yat 0.x+
#899 Scheduler::wait_for(int) new Jari Häkkinen request major yat 0.x+
#900 Job creating jobs new Jari Häkkinen request major yat 0.x+
#902 split SupervisedClassifer into weighted and non-weighted new Markus Ringnér discussion major yat 0.x+
#910 add Scheduler API to modify size (number of threads) of the scheduler new Jari Häkkinen discussion major yat 0.x+
#913 BamPairIterator sorted wrt first read new Peter request major yat 0.x+
#915 read and write numbers in binary format new Jari Häkkinen request major yat 0.x+
#916 recycle Scheduler after wait new Jari Häkkinen request major yat 0.17
#917 undefined reference to symbol 'pthread_condattr_setclock@@GLIBC_2.3.3' new Jari Häkkinen defect major yat 0.x+
#920 resize VCF::Data new Peter discussion major yat 0.x+
#922 configure: gsl check doesn't use detected blas accepted Peter defect major yat 0.17
#923 train interpolation classes outside constructor new Peter discussion major yat 0.x+
#31 add Permutation test for weighted Score new Peter enhancement minor yat 0.x+
#82 add BaseFileReader new Jari Häkkinen request minor yat 0.x+
#139 Combinations of Target objects new Peter request minor yat 0.x+
#141 unknown Target new Peter request minor yat 0.x+
#231 read, digest, and adopt APR devel guidelines new Jari Häkkinen enhancement minor yat 0.x+
#358 add iterators in Kernel class new Peter request minor yat 0.x+
#373 Paramaterize how to calculate the average in Quantile Normalization new Peter enhancement minor yat 0.x+
#382 Create an Index object from a string in Target class new Peter enhancement minor yat 0.x+
#401 Weighted Quantile Normalization new Peter discussion minor yat 0.x+
#422 add(first1, last1, first2) in regression::Local new Peter enhancement minor yat 0.x+
#428 yat.m4 and yat-config only work when installed new Jari Häkkinen enhancement minor yat 0.x+
#541 access to prediction on training data in EnsembleBuilder new Peter request minor yat 0.x+
#552 calculate entropy of a histogram new Peter request minor yat 0.x+
#690 AveragerPair::sum_xy_centered unstable new Peter defect minor yat 0.x+
#732 use AC_CONFIG_MACRO_DIRS new Jari Häkkinen request minor yat 0.x+
#765 re-implement WeightedIterator as boost:zip_iterator new Jari Häkkinen request minor yat 0.x+
#781 reimplement Averagers as wrappers around boost::accumulators new Peter discussion minor yat 0.x+
#791 lock ostreams new Peter discussion minor yat 0.x+
#824 OptionVersion class new Peter request minor yat 0.x+
#888 is it possible to call split/getvector in load functions? new Jari Häkkinen discussion minor yat 0.x+
#912 confidence interval for ROC::area() new Peter request minor yat 0.x+
#926 yat_lt_link_ifelse_test.sh and yat_m4_with_bam_test.sh fail because they use the wrong compiler new Jari Häkkinen defect minor yat 0.17
#51 score object using SVM new Peter request trivial yat 0.x+
#127 Use Distance::Euclidean in GaussianKernelFunction new Peter enhancement trivial yat 0.x+
#400 add functions taking ranges should return object that is modified new Peter enhancement trivial yat 0.x+
#618 redundancy in 'required' and dependency in Makefile.am new Jari Häkkinen enhancement trivial yat 0.x+
#727 mention how manipulate GSL error handler in Doxygen docs new Peter request trivial yat 0.x+
#801 non-standard functions new Jari Häkkinen defect trivial yat 0.x+
#805 installed libyat linked in before local libyat new Peter defect trivial yat 0.x+
#812 include autoconf macros in doxygen docs new Peter discussion trivial yat 0.x+
#845 handle GSL errors gracefully in test suite new Jari Häkkinen enhancement trivial yat 0.x+
#865 binary_weight doesn't work with proxy value type new Jari Häkkinen defect trivial yat 0.x+
#914 Access number of threads in Scheduler new Jari Häkkinen request trivial yat 0.17
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