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Ticket Summary Owner Type Priority Milestone Component
#83 Change name of the project!! Jari Häkkinen request blocker yat 0.2 classifier
#84 Move gslapi stuff to utility Jari Häkkinen defect blocker yat 0.2 gslapi
#107 bug in ensemble.build() Peter defect blocker yat 0.2 classifier
#132 SubsetGenerator with FeatureSelector crashes Peter defect blocker yat 0.2 classifier
#147 KernelLookup::test_kernel does not work Peter defect blocker yat 0.2 classifier
#184 Two versions of Doxygen pages. Jari Häkkinen request blocker yat 0.4 documentation
#193 Serious flaw: matrix mutation functionality and view does not work properly Jari Häkkinen defect blocker yat 0.3 (Public release) utility
#220 Release 0.3 does not compile on SuSE 10.1!!! Jari Häkkinen defect blocker yat 0.3.1 build
#222 'make test' fails on lev and shakespeare Jari Häkkinen defect blocker yat 0.3.1 test
#370 using boost Peter request blocker yat 0.5 build
#11 random class does not accept seed!!! Jari Häkkinen defect critical yat 0.3 (Public release) random
#29 NaN in weighted statistics and Score Peter defect critical statistics
#47 CrossSplitter::validation_data does not return constant number of samples Peter defect critical classifier
#94 Target.random_shuffle() Peter enhancement critical yat 0.3 (Public release) classifier
#96 Feature selection should not be part of SupervisedClassifier Peter enhancement critical yat 0.2 classifier
#148 use pointer dynamic_cast when failure is ecpected Peter enhancement critical yat 0.4 classifier
#172 Should the int SVD::solve(const utility::vector& b, utility::vector x) be changed ... Jari Häkkinen defect critical yat 0.2 utility
#174 IRRank class is defined in two files! Markus Ringnér defect critical yat 0.2 classifier
#201 const matrix& matrix::operator*=(const matrix& other) Jari Häkkinen defect critical yat 0.3 (Public release) utility
#205 resize matrix Peter enhancement critical yat 0.3 (Public release) utility
#226 Create how to release document Jari Häkkinen request critical yat 0.4 documentation
#227 Generated documentation should end up in another directory Peter request critical yat 0.4 documentation
#236 Predictions using Ensemble with feature selection does not work properly Peter defect critical yat 0.4 classifier
#256 vector matrix view design - could it be improved? Peter request critical yat 0.4 utility
#285 vector assignment causes segmentation error Peter defect critical yat 0.4 utility
#287 avoid using dynamic_cast in Subset and SupervisedClassifer Peter specification critical yat 0.4 classifier
#299 redesign of matrix class Jari Häkkinen request critical yat 0.4 utility
#345 EnsembleBuilder::predict does not work Peter defect critical yat 0.4 classifier
#374 Make documentation cron job report failures through email to maintainer. Jari Häkkinen enhancement critical yat 0.5 documentation
#406 svn repo and trac server location moved Peter request critical yat 0.4.2 build
#440 StrideIterator - StrideIterator ignores the stride Peter defect critical yat 0.5 test
#467 disable implicit conversion between Vector and its View siblings Peter request critical yat 0.5 utility
#489 Check template requirements Peter request critical yat 0.7 test
#535 qQuantileNormalization does not work with missing values represened with NaNs and weight 0 Jari Häkkinen defect critical yat 0.5.3 normalizer
#579 EnsembleBuilder::predict doesn't work Peter defect critical yat 0.5.6 classifier
#603 Upgrade boost version requirmeent to 1.35 Peter discussion critical yat 0.6 test
#724 regression in NeedlemanWunsch Peter defect critical yat 0.9.1 utility
#733 build failure with static libbam Peter defect critical yat 0.10.1 build
#794 support for htslib Peter request critical yat 0.13 build
#863 boost thread not detected Peter defect critical yat 0.13.1 build
#873 skip lvalue requirement in Distance concept Peter defect critical yat 0.14 utility
#927 PriorityQueue only stores unique elements Peter defect critical yat 0.16.1 utility
#930 cyclic references in Scheduler::Job Peter defect critical yat 0.17 utility
#934 configure doesn't find libhts 1.10 Jari Häkkinen defect critical yat 0.17 build
#936 Scheduler skips jobs (sometimes) Jari Häkkinen defect critical yat 0.17 utility
#939 remove support for libbam Peter request critical yat 0.18 build
#1 Checking of write permissions to files in FileIO does not work Jari Häkkinen defect major yat 0.2 utility
#2 Add exceptions to gsl usage Jari Häkkinen request major yat 0.2 gslapi
#4 Split weighted and non-weighted regressors Peter enhancement major yat 0.2 statistics
#5 Does this view work properly Jari Häkkinen request major gslapi
#6 Rework theplu::statistics::AveragerWeighted Peter request major statistics
#7 Document theplu::utility::IO_error Jari Häkkinen defect major yat 0.2 documentation
#8 Member theplu::random::DiscreteUniform::DiscreteUniform (const u_long n) Jari Häkkinen request major yat 0.2 random
#9 theplu::statistics::regression::Local::fit (std::ostream &s, const double fraction, const u_int step_size=1) Peter defect major yat 0.2 statistics
#10 theplu::utility::read_to_double (std::istream &is, std::vector< double > &vec) Jari Häkkinen defect major yat 0.2 utility
#12 Implement copy constructor for SVM::KernelView Peter request major classifier
#17 constness of views do not work ... or do they? Jari Häkkinen defect major yat 0.2 gslapi
#18 const vector matrix::operator*(const vector&) const Jari Häkkinen defect major yat 0.2 utility
#21 General view for vector and matrix Jari Häkkinen enhancement major yat 0.3 (Public release) gslapi
#24 Averager classes should have constructors taking gslapi::vectors Peter enhancement major yat 0.3 (Public release) statistics
#27 Create Classifier::Ensemble Peter request major classifier
#28 speed up CrossSplitting Peter defect major classifier
#35 modify interface to CrossSplitting Peter request major classifier
#36 add weights to CrossSplitter Peter defect major classifier
#38 add weights to SVM (kernel) Peter defect major classifier
#39 Fix NCC Markus Ringnér request major classifier
#40 Feature selection interaction with sampler Peter defect major classifier
#41 averager_test fails using compiler optimization flags Peter defect major statistics
#42 constructor matrix(void), should it exist? Jari Häkkinen request major yat 0.2 gslapi
#43 AveragerPair return 'nan' for some member functions when no data has been added to it. Peter request major yat 0.3 (Public release) classifier
#48 implement SVM::predict Peter request major classifier
#50 implement matrix.binary_weight(void) Peter request major classifier
#52 Nan*0 treatment in GaussianKernelFunction Peter defect major yat 0.3 (Public release) classifier
#53 Constructor gslapi::vector(void) Jari Häkkinen defect major yat 0.2 gslapi
#57 implement Naive Baysian Classifier Peter request major yat 0.3 (Public release) classifier
#59 NCC should accept external quality weights Markus Ringnér enhancement major yat 0.3 (Public release) classifier
#60 Split CrossSplitter into Sampler and SubSet Peter request major yat 0.2 classifier
#61 add operator[] DataLookup1D Peter enhancement major yat 0.3 (Public release) classifier
#62 add operator[] gslapi::vector Jari Häkkinen request major yat 0.2 gslapi
#63 remove constructor gslapi::vector(DataLookup1D&) Jari Häkkinen defect major yat 0.3 (Public release) gslapi
#64 re-write score functions and Averagers taking vectors Peter enhancement major yat 0.4 statistics
#65 Add brief descriptions to classes Peter request major yat 0.2 documentation
#66 Add GaussianKernelFunction_test Peter request major yat 0.3 (Public release) test
#68 Make weighted statistics document more visible from the trac or docs pages. Peter defect major yat 0.2 documentation
#70 Document ConsensusInputRanker Peter defect major classifier
#73 Document KernelLookup Peter defect major documentation
#74 Document MatrixLookup Peter defect major documentation
#75 Doxygen document SupervisedClassifier Peter request major yat 0.4 documentation
#76 gslapi::matrix Jari Häkkinen enhancement major yat 0.2 gslapi
#77 Doxygen document linear regression Peter request major yat 0.2 documentation
#78 Document MultiDimensional Peter request major yat 0.2 documentation
#79 Document statistics::tScore::score() Peter defect major documentation
#80 Change implementation of utility::FileIO::file_exists() Jari Häkkinen defect major yat 0.2 utility
#81 Make the regression classes uniform Peter request major yat 0.2 regression
#88 Add SAM Score class Peter request major yat 0.2 statistics
#89 document DataLookup2D Peter request major classifier
#95 ownership in Lookups is not optimal Peter enhancement major yat 0.3 (Public release) classifier
#99 document CommandLine class Peter request major documentation
#100 gslapi::matrix::nan() Markus Ringnér request major yat 0.2 classifier
#102 bool is_weighted() function in DataLook2D Peter request major yat 0.2 classifier
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