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Ticket Summary Owner Type Priority Milestone Component
#14 add reset function to SVM Peter enhancement trivial classifier
#15 Copy constructor for SVM Peter enhancement trivial classifier
#56 SVM convergence problem Peter request trivial yat 0.2 documentation
#87 replace cumulative hypergeometric with GSL implementation Peter request trivial yat 0.5 statistics
#97 copyright in test source Jari Häkkinen request trivial yat 0.3 (Public release) documentation
#123 document SNR::score weighted version Peter enhancement trivial yat 0.2 documentation
#125 KerneFunction remove obsolete operator() taking FOUR arguments Peter defect trivial yat 0.3 (Public release) classifier
#130 KernelLookups and MatrixLookups not in inheritance structure but template Peter discussion trivial yat 0.4 classifier
#140 Don't keep SVM and Index in same file Peter request trivial yat 0.3 (Public release) documentation
#157 make Commandline::print_try_help(void) public Peter enhancement trivial yat 0.4 utility
#213 should we remove minmax_index Jari Häkkinen request trivial yat 0.3 (Public release) utility
#239 to_lower and to_upper should return reference to passed string Peter enhancement trivial yat 0.4 utility
#282 check for 'd' in FileUtil::permission Jari Häkkinen enhancement trivial yat 0.4 utility
#329 rename struct weighted_type to weighted_tag Peter enhancement trivial yat 0.4 utility
#334 return Derived* from make_classifier not SupervisedClassifier Markus Ringnér enhancement trivial yat 0.4 classifier
#338 configure warning about missing latex could be improved when Doxygen already is missing Jari Häkkinen enhancement trivial yat 0.4 build
#352 modify FLAGS when configure option --with-gsl-prefix Peter enhancement trivial yat 0.5 build
#354 automake and COPYING Jari Häkkinen request trivial yat 0.5 build
#371 remove ax_prefix_config_h.m4 Peter request trivial yat 0.5 build
#383 why both operator() and operator[] in Target? Markus Ringnér discussion trivial yat 0.5 classifier
#386 AX_PATH_GSL doesn't check for GSL header files Peter defect trivial yat 0.6 build
#388 use fifth argument [action-if-cross-compiling] in AC_RUN_IF_ELSE Jari Häkkinen enhancement trivial yat 0.5 build
#390 libyat is linked together with C-linker Peter defect trivial yat 0.5 build
#392 doxygen, tests, and His ol' Grandma Jari Häkkinen discussion trivial yat 0.8 build
#408 Using gnuify-changelog.pl ... or re-think how ChangeLog should be maintained. Jari Häkkinen discussion trivial yat 0.5 build
#410 /bin/sh: line 1: *.h: command not found Peter defect trivial yat 0.5 build
#411 pkg-config doesn't work because missing file boost.pc Peter defect trivial yat 0.5 build
#412 Doxygen - Build redundancy Peter defect trivial yat 0.6 build
#420 typedef iterator_type in Range Peter enhancement trivial yat 0.5 utility
#438 make doc will not regenerate docs when a file has been removed Peter defect trivial yat 0.6 build
#446 skip documentation test rather that run it conditionally Peter enhancement trivial yat 0.5 build
#454 Matrix(0, 42) or its transpose Matrix(42, 0) is not allowed Peter discussion trivial yat 0.6 utility
#455 take care of ties in KolmogorovSmirnov Peter enhancement trivial yat 0.5 statistics
#456 avoid using namespace LT_ Peter defect trivial yat 0.5 build
#468 propagate configure arguments to DISTCHECK_CONFIGURE_FLAGS Peter enhancement trivial yat 0.5 build
#469 add doxygen tag "\since New in yat 0.5" in new interpolation classes Jari Häkkinen request trivial yat 0.5 documentation
#471 check for svn wc relies on svnversion Peter enhancement trivial yat 0.5 build
#479 Ranger normalizers should return void Peter enhancement trivial yat 0.5 normalizer
#481 calling functions in Option before Commandline has been parsed should throw Peter enhancement trivial yat 0.5 utility
#482 $(ECHO) is not defined using libtool 2 Jari Häkkinen defect trivial yat 0.5 build
#483 install yat_add_flag.m4 Peter request trivial yat 0.5 build
#486 yat_m4_test.sh does not honor --prefix and friend set at make time Peter defect trivial yat 0.5 build
#487 output from yat.m4 is ugly Peter enhancement trivial yat 0.5 build
#499 percentile occurs twice in doxygen output Peter defect trivial yat 0.5.2 documentation
#519 ostream.precision should be restored in output operators Peter enhancement trivial yat 0.6 utility
#521 deprecate OptionInFile and OptionOutFile Peter request trivial yat 0.6 utility
#530 add version output of doxygen in documentation_test.sh Peter request trivial yat 0.6 test
#534 "./configure --without-boost" returns "old boost found" Jari Häkkinen defect trivial yat 0.6 build
#539 including uninstalled <yat/utility/deprecate.h> fails in VPATH build Peter defect trivial yat 0.5.4 utility
#544 allow --without-boost, --without-gsl and --without-blas Peter request trivial yat 0.6 build
#546 configure finds gsl-config but not gsl header Peter defect trivial yat 0.6 build
#547 configure suntax error when adding /opt/local/include to CPPFLAGS Peter defect trivial yat 0.6 build
#557 support env var VERBOSE in tests and deprecate YAT_TEST_VERBOSE Peter request trivial yat 0.6 test
#559 OptionFile says permission denied when file does not exist Peter enhancement trivial yat 0.6 utility
#574 avoid conflict in NEWS when merging patch release into trunk Peter enhancement trivial yat 0.6 build
#576 improve docs of utility::is_equal Peter enhancement trivial yat 0.6 documentation
#622 no table in Container2D concept page Peter defect trivial yat 0.7 documentation
#630 HAVE_YAT is defined to /**/ Peter enhancement trivial yat 0.7 m4
#636 "make distclean; ./configure; make clean;" fails Peter defect trivial yat 0.7 build
#645 cmd_error with 'prog: : invalid argument' Peter enhancement trivial yat 0.7 utility
#646 change name of tests from *_test to *.test Peter enhancement trivial yat 0.7 test
#652 mention provided funtors that work with Centralizer Peter enhancement trivial yat 0.8 normalizer
#657 make srcdir and builddir siblings in maintainer-check Peter enhancement trivial yat 0.8 m4
#658 doxygen warns: 'Found \endcond command without matching \cond' Peter defect trivial yat 0.7.2 documentation
#662 create test/environment.h with AC_CONFIG_HEADERS Peter enhancement trivial yat 0.8 build
#683 configure says no doxygen found when old doxygen is found Peter defect trivial yat 0.9 build
#696 cache results in yat.m4 Peter enhancement trivial yat 0.9 m4
#698 SegmentTree docs has traces from SegmentSet Peter enhancement trivial yat 0.8.1 documentation
#713 gcc 4.0.1 complains about -pthread Peter defect trivial yat 0.9 build
#715 distcheck fails Peter defect trivial yat 0.8.2 build
#728 documentation displays full absolute include path Peter defect trivial yat 0.9.2 documentation
#736 -lbam and -lz are not mentioned in yat.pc Peter defect trivial yat 0.10.1 build
#748 SKIP yat_pc_test.sh when --without-samtools Peter enhancement trivial yat 0.11 test
#750 update svndigest:ignore properties Peter request trivial yat 0.11 build
#756 yat-pc-check is not working in parallel build Peter defect trivial yat 0.10.3 build
#777 private namespace detail is included in doxygen output Peter defect trivial yat 0.11.2 documentation
#789 ./configure CXXFLAGS="-g -O3" Jari Häkkinen discussion trivial yat 0.12 build
#808 prefer using .private variable (when possible) in yat.pc Peter enhancement trivial yat 0.13 build
#809 use zlib's pc file Peter enhancement trivial yat 0.13 build
#811 brokeln html link to trivial iterator Peter defect trivial yat 0.13 documentation
#813 add short description of IGP Peter enhancement trivial yat 0.13 documentation
#845 handle GSL errors gracefully in test suite Peter enhancement trivial yat 0.18 test
#851 includes are not stripped correctly (sometimes) Peter defect trivial yat 0.15 documentation
#860 omic::DNA is not thread safe Peter defect trivial yat 0.14 omic
#861 detect failures in BamHeader::text(string) Peter request trivial yat 0.15 omic
#866 Queue and PriorityQueue should be refactored with common base class Peter enhancement trivial yat 0.16 utility
#879 document BamHeader::read_group_iterator Peter enhancement trivial yat 0.15 documentation
#893 dirname("") triggers assertion Peter defect trivial yat 0.14.4 utility
#907 RNG::seed_from_devurandom is not exception safe Peter defect trivial yat 0.16 random
#914 Access number of threads in Scheduler Jari Häkkinen request trivial yat 0.17 utility
#925 document parameter number in VCF::add* functions Peter enhancement trivial yat 0.17 documentation
#938 BamPairIterator does not pass test::Suite::input_iterator_test Jari Häkkinen defect trivial yat 0.18 test
#940 add failure check in Fasta::fetch Peter request trivial yat 0.18 omic
#943 boost/random/negative_binomial_distribution.hpp in boost 1.69.0 includes deprecated files Peter defect trivial yat 0.18 random
#945 require GSL 1.13 Peter request trivial yat 0.18 utility
#957 regression::NegativeBinomial should inherit from regression::Multivariate Peter defect trivial yat 0.18 regression
#19 Averager.n() return unsigned Peter enhancement minor yat 0.3 (Public release) statistics
#20 implement WilcoxonFoldChange Peter enhancement minor yat 0.5 statistics
#22 Implement class AveragerPairWeighted Peter enhancement minor statistics
#23 redesign OnedimensionalWeighted Peter request minor yat 0.2 statistics
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