#1 |
Checking of write permissions to files in FileIO does not work
|
Jari Häkkinen
|
defect
|
major
|
yat 0.2
|
utility
|
#2 |
Add exceptions to gsl usage
|
Jari Häkkinen
|
request
|
major
|
yat 0.2
|
gslapi
|
#5 |
Does this view work properly
|
Jari Häkkinen
|
request
|
major
|
|
gslapi
|
#7 |
Document theplu::utility::IO_error
|
Jari Häkkinen
|
defect
|
major
|
yat 0.2
|
documentation
|
#8 |
Member theplu::random::DiscreteUniform::DiscreteUniform (const u_long n)
|
Jari Häkkinen
|
request
|
major
|
yat 0.2
|
random
|
#10 |
theplu::utility::read_to_double (std::istream &is, std::vector< double > &vec)
|
Jari Häkkinen
|
defect
|
major
|
yat 0.2
|
utility
|
#11 |
random class does not accept seed!!!
|
Jari Häkkinen
|
defect
|
critical
|
yat 0.3 (Public release)
|
random
|
#17 |
constness of views do not work ... or do they?
|
Jari Häkkinen
|
defect
|
major
|
yat 0.2
|
gslapi
|
#18 |
const vector matrix::operator*(const vector&) const
|
Jari Häkkinen
|
defect
|
major
|
yat 0.2
|
utility
|
#21 |
General view for vector and matrix
|
Jari Häkkinen
|
enhancement
|
major
|
yat 0.3 (Public release)
|
gslapi
|
#42 |
constructor matrix(void), should it exist?
|
Jari Häkkinen
|
request
|
major
|
yat 0.2
|
gslapi
|
#53 |
Constructor gslapi::vector(void)
|
Jari Häkkinen
|
defect
|
major
|
yat 0.2
|
gslapi
|
#62 |
add operator[] gslapi::vector
|
Jari Häkkinen
|
request
|
major
|
yat 0.2
|
gslapi
|
#63 |
remove constructor gslapi::vector(DataLookup1D&)
|
Jari Häkkinen
|
defect
|
major
|
yat 0.3 (Public release)
|
gslapi
|
#76 |
gslapi::matrix
|
Jari Häkkinen
|
enhancement
|
major
|
yat 0.2
|
gslapi
|
#80 |
Change implementation of utility::FileIO::file_exists()
|
Jari Häkkinen
|
defect
|
major
|
yat 0.2
|
utility
|
#83 |
Change name of the project!!
|
Jari Häkkinen
|
request
|
blocker
|
yat 0.2
|
classifier
|
#84 |
Move gslapi stuff to utility
|
Jari Häkkinen
|
defect
|
blocker
|
yat 0.2
|
gslapi
|
#91 |
Parameter class
|
Jari Häkkinen
|
enhancement
|
minor
|
yat 0.3 (Public release)
|
utility
|
#97 |
copyright in test source
|
Jari Häkkinen
|
request
|
trivial
|
yat 0.3 (Public release)
|
documentation
|
#118 |
Overhaul of configure.ac
|
Jari Häkkinen
|
enhancement
|
major
|
yat 0.4
|
build
|
#138 |
utility::matrix add function could be operator+=
|
Jari Häkkinen
|
request
|
minor
|
yat 0.3 (Public release)
|
utility
|
#152 |
get and set state of RNG
|
Jari Häkkinen
|
enhancement
|
minor
|
yat 0.3 (Public release)
|
random
|
#153 |
Change namespace hierarchy
|
Jari Häkkinen
|
request
|
major
|
yat 0.2
|
statistics
|
#155 |
Current vector implementation can cause "unexpected" runtime aborts if bad programs are created.
|
Jari Häkkinen
|
enhancement
|
major
|
yat 0.3 (Public release)
|
utility
|
#170 |
Move inline directive in all headers and move constructor/destructor definitions in headers to .cc.
|
Jari Häkkinen
|
enhancement
|
major
|
yat 0.3 (Public release)
|
classifier
|
#171 |
Go through all comments with Jari requests.
|
Jari Häkkinen
|
defect
|
major
|
yat 0.2
|
utility
|
#172 |
Should the int SVD::solve(const utility::vector& b, utility::vector x) be changed ...
|
Jari Häkkinen
|
defect
|
critical
|
yat 0.2
|
utility
|
#173 |
Optimize return values from member functions of PCA and related classes
|
Jari Häkkinen
|
defect
|
major
|
yat 0.3 (Public release)
|
utility
|
#179 |
DiscreteUniform(const u_long n);
|
Jari Häkkinen
|
defect
|
major
|
yat 0.3 (Public release)
|
random
|
#184 |
Two versions of Doxygen pages.
|
Jari Häkkinen
|
request
|
blocker
|
yat 0.4
|
documentation
|
#189 |
There are output to cerr in some library classes. Should these throw exceptions?
|
Jari Häkkinen
|
enhancement
|
minor
|
yat 0.5
|
regression
|
#190 |
utility::vector and utility::matrix expects quiet_NaN is supported but it might not be.
|
Jari Häkkinen
|
defect
|
major
|
yat 0.4
|
build
|
#191 |
Avoid unnecessary vector copying in kNNI and WeNNI
|
Jari Häkkinen
|
enhancement
|
minor
|
yat 0.3 (Public release)
|
utility
|
#192 |
kNNI and WeNNI has hard coded small numbers, change to something standardized.
|
Jari Häkkinen
|
enhancement
|
minor
|
yat 0.5
|
utility
|
#193 |
Serious flaw: matrix mutation functionality and view does not work properly
|
Jari Häkkinen
|
defect
|
blocker
|
yat 0.3 (Public release)
|
utility
|
#194 |
minimize interface to matrix
|
Jari Häkkinen
|
enhancement
|
minor
|
yat 0.3 (Public release)
|
utility
|
#195 |
minimize interface to vector
|
Jari Häkkinen
|
enhancement
|
minor
|
yat 0.3 (Public release)
|
utility
|
#196 |
Propagate version number to doxygen.config using the make system.
|
Jari Häkkinen
|
defect
|
major
|
yat 0.3 (Public release)
|
documentation
|
#200 |
utility::vector add function could be operator+=
|
Jari Häkkinen
|
request
|
major
|
yat 0.3 (Public release)
|
utility
|
#201 |
const matrix& matrix::operator*=(const matrix& other)
|
Jari Häkkinen
|
defect
|
critical
|
yat 0.3 (Public release)
|
utility
|
#206 |
is matrix:set(const matrix&) needed?
|
Jari Häkkinen
|
enhancement
|
major
|
yat 0.3 (Public release)
|
utility
|
#208 |
Update Requirements on wiki:start
|
Jari Häkkinen
|
enhancement
|
minor
|
yat 0.4
|
documentation
|
#213 |
should we remove minmax_index
|
Jari Häkkinen
|
request
|
trivial
|
yat 0.3 (Public release)
|
utility
|
#218 |
config.h should be installed
|
Jari Häkkinen
|
defect
|
major
|
yat 0.4
|
build
|
#220 |
Release 0.3 does not compile on SuSE 10.1!!!
|
Jari Häkkinen
|
defect
|
blocker
|
yat 0.3.1
|
build
|
#222 |
'make test' fails on lev and shakespeare
|
Jari Häkkinen
|
defect
|
blocker
|
yat 0.3.1
|
test
|
#224 |
Test Suite Class
|
Jari Häkkinen
|
request
|
major
|
yat 0.4
|
test
|
#226 |
Create how to release document
|
Jari Häkkinen
|
request
|
critical
|
yat 0.4
|
documentation
|
#228 |
RNG is not Singleton
|
Jari Häkkinen
|
defect
|
major
|
yat 0.4
|
build
|
#229 |
delete RNG results in a bus error
|
Jari Häkkinen
|
defect
|
major
|
yat 0.4
|
random
|
#232 |
trac has moved - correct all links to this site
|
Jari Häkkinen
|
defect
|
major
|
yat 0.4
|
documentation
|
#233 |
Links to documentation are broken
|
Jari Häkkinen
|
defect
|
major
|
yat 0.5
|
documentation
|
#242 |
Test data files get installed in /usr/local/share
|
Jari Häkkinen
|
defect
|
major
|
yat 0.4
|
build
|
#243 |
Unexpected version numbering of installed libraries
|
Jari Häkkinen
|
defect
|
major
|
yat 0.4
|
build
|
#257 |
matrix does not accept "-inf"
|
Jari Häkkinen
|
enhancement
|
minor
|
yat 0.4
|
utility
|
#261 |
Implement yat_assert properly
|
Jari Häkkinen
|
enhancement
|
major
|
yat 0.4
|
test
|
#263 |
matrix and iterators
|
Jari Häkkinen
|
discussion
|
major
|
yat 0.4
|
utility
|
#280 |
when GSL or other needed things are not found configure should fail
|
Jari Häkkinen
|
enhancement
|
minor
|
yat 0.4
|
build
|
#281 |
exceptional style
|
Jari Häkkinen
|
enhancement
|
major
|
yat 0.7
|
utility
|
#282 |
check for 'd' in FileUtil::permission
|
Jari Häkkinen
|
enhancement
|
trivial
|
yat 0.4
|
utility
|
#299 |
redesign of matrix class
|
Jari Häkkinen
|
request
|
critical
|
yat 0.4
|
utility
|
#319 |
link to Doxygen documentation trunk version is broken
|
Jari Häkkinen
|
defect
|
minor
|
yat 0.4
|
documentation
|
#321 |
Comparison of Iterators
|
Jari Häkkinen
|
enhancement
|
major
|
yat 0.4
|
utility
|
#328 |
Ticket for testing svn post-commit hook
|
Jari Häkkinen
|
enhancement
|
major
|
|
test
|
#338 |
configure warning about missing latex could be improved when Doxygen already is missing
|
Jari Häkkinen
|
enhancement
|
trivial
|
yat 0.4
|
build
|
#354 |
automake and COPYING
|
Jari Häkkinen
|
request
|
trivial
|
yat 0.5
|
build
|
#361 |
Averager class does not support removal of data
|
Jari Häkkinen
|
enhancement
|
major
|
yat 0.5
|
statistics
|
#365 |
files doc/*.doxygen are not included in distribution
|
Jari Häkkinen
|
defect
|
major
|
yat 0.4.1
|
build
|
#372 |
version.h is not found by doxygen (when using VPATH)
|
Jari Häkkinen
|
defect
|
minor
|
yat 0.5
|
build
|
#374 |
Make documentation cron job report failures through email to maintainer.
|
Jari Häkkinen
|
enhancement
|
critical
|
yat 0.5
|
documentation
|
#376 |
configure reports flag info that may be misleading
|
Jari Häkkinen
|
defect
|
minor
|
yat 0.5
|
build
|
#378 |
FileUtil::exists() fails on large files
|
Jari Häkkinen
|
defect
|
major
|
yat 0.4.2
|
utility
|
#388 |
use fifth argument [action-if-cross-compiling] in AC_RUN_IF_ELSE
|
Jari Häkkinen
|
enhancement
|
trivial
|
yat 0.5
|
build
|
#391 |
return type in iterator_traits is hard-coded to double
|
Jari Häkkinen
|
enhancement
|
major
|
yat 0.5
|
utility
|
#392 |
doxygen, tests, and His ol' Grandma
|
Jari Häkkinen
|
discussion
|
trivial
|
yat 0.8
|
build
|
#404 |
test that compiler flags work with compiler
|
Jari Häkkinen
|
defect
|
minor
|
yat 0.5
|
build
|
#408 |
Using gnuify-changelog.pl ... or re-think how ChangeLog should be maintained.
|
Jari Häkkinen
|
discussion
|
trivial
|
yat 0.5
|
build
|
#414 |
Commandline doesnt warn when adding two options with same name
|
Jari Häkkinen
|
defect
|
minor
|
yat 0.5
|
utility
|
#424 |
Chapter 1 title in pdf file says 'Main Page'
|
Jari Häkkinen
|
enhancement
|
major
|
yat 0.5
|
documentation
|
#425 |
Implement qQuantile normalizer
|
Jari Häkkinen
|
enhancement
|
major
|
yat 0.5
|
normalizer
|
#427 |
docs generation needs doxygen 1.5 or later
|
Jari Häkkinen
|
defect
|
minor
|
yat 0.5
|
build
|
#431 |
AC_CHECK_HEADERS([unistd.h])
|
Jari Häkkinen
|
discussion
|
minor
|
yat 0.5
|
build
|
#435 |
avoid using -m64 if possible
|
Jari Häkkinen
|
enhancement
|
minor
|
yat 0.6
|
build
|
#436 |
Change license to GPL 3
|
Jari Häkkinen
|
request
|
major
|
yat 0.5
|
documentation
|
#447 |
move internal stuff to sub-directory detail
|
Jari Häkkinen
|
request
|
minor
|
yat 0.5
|
utility
|
#458 |
documentation_test.sh check fails
|
Jari Häkkinen
|
defect
|
major
|
yat 0.5
|
test
|
#459 |
DiscreteGeneral has pointer but no declared copy constructor (or assignment operator)
|
Jari Häkkinen
|
defect
|
major
|
yat 0.5
|
random
|
#463 |
Improve the documentation of Matrix(istream&,char)
|
Jari Häkkinen
|
defect
|
major
|
yat 0.5
|
documentation
|
#464 |
WeNNI does not handle NaNs well
|
Jari Häkkinen
|
defect
|
major
|
yat 0.5
|
utility
|
#466 |
Add interface to GSL interpolation functionality
|
Jari Häkkinen
|
enhancement
|
major
|
yat 0.5
|
regression
|
#469 |
add doxygen tag "\since New in yat 0.5" in new interpolation classes
|
Jari Häkkinen
|
request
|
trivial
|
yat 0.5
|
documentation
|
#476 |
NNI algorithms return wrong number of rows not imputed
|
Jari Häkkinen
|
discussion
|
major
|
yat 0.5
|
test
|
#482 |
$(ECHO) is not defined using libtool 2
|
Jari Häkkinen
|
defect
|
trivial
|
yat 0.5
|
build
|
#484 |
install-hook in build_support does not work on mac
|
Jari Häkkinen
|
defect
|
minor
|
yat 0.5
|
build
|
#511 |
linking statically against atlas fails on Fedora
|
Jari Häkkinen
|
defect
|
major
|
yat 0.6
|
build
|
#513 |
Documentation of qQuantileNormalization does not clearly explain what the target is
|
Jari Häkkinen
|
enhancement
|
major
|
yat 0.5.3
|
documentation
|
#518 |
choosing cblas - when and how?
|
Jari Häkkinen
|
discussion
|
major
|
yat 0.6
|
build
|
#527 |
Cannot run configure on 64-bit CentOS
|
Jari Häkkinen
|
defect
|
major
|
yat 0.5.3
|
build
|
#528 |
make check fails in 0.5-stable branch
|
Jari Häkkinen
|
defect
|
major
|
yat 0.5.3
|
test
|