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Ticket Summary Owner Type Priority Milestone Component
#613 6 tests fail with old autotools Peter defect major yat 0.7 test
#817 access misc text in BamHeader Peter request major yat 0.13 omic
#914 Access number of threads in Scheduler Jari Häkkinen request trivial yat 0.17 utility
#431 AC_CHECK_HEADERS([unistd.h]) Jari Häkkinen discussion minor yat 0.5 build
#430 AC_C_INLINE and -DHAVE_INLINE Peter enhancement minor yat 0.5 build
#520 A class to redirect streams easily. Peter request major yat 0.6 utility
#143 add access to InputRankers in ConsensusInputRanker Peter enhancement minor yat 0.3 (Public release) classifier
#65 Add brief descriptions to classes Peter request major yat 0.2 documentation
#624 add concept check class for concept DataIterator Peter request minor yat 0.7 utility
#625 add concept check class for concept Distance Peter request minor yat 0.7 utility
#626 add concept check class for concept Mutable_Container2D Peter request minor yat 0.7 utility
#627 add concept check class for concept Neighbor Weighting Method Peter request minor yat 0.7 utility
#524 add configure option --with-cblas in yat's configure Peter request minor yat 0.6 build
#225 Add contact information for the yat project on the trac pages. Peter enhancement major yat 0.4 documentation
#469 add doxygen tag "\since New in yat 0.5" in new interpolation classes Jari Häkkinen request trivial yat 0.5 documentation
#2 Add exceptions to gsl usage Jari Häkkinen request major yat 0.2 gslapi
#940 add failure check in Fasta::fetch Peter request trivial yat 0.18 omic
#66 Add GaussianKernelFunction_test Peter request major yat 0.3 (Public release) test
#466 Add interface to GSL interpolation functionality Jari Häkkinen enhancement major yat 0.5 regression
#61 add operator[] DataLookup1D Peter enhancement major yat 0.3 (Public release) classifier
#62 add operator[] gslapi::vector Jari Häkkinen request major yat 0.2 gslapi
#14 add reset function to SVM Peter enhancement trivial classifier
#88 Add SAM Score class Peter request major yat 0.2 statistics
#910 add Scheduler API to modify size (number of threads) of the scheduler Peter request major yat 0.17 utility
#262 Add section on Distance in weighted statistics document Peter request minor yat 0.4 documentation
#813 add short description of IGP Peter enhancement trivial yat 0.13 documentation
#462 add sorted range to KS Peter request minor yat 0.5 statistics
#523 add support for option --libs-without-cblas in yat-config Peter request minor yat 0.6 build
#198 add test for Distance classes Peter request major yat 0.3 (Public release) statistics
#162 add test of documentation Peter enhancement major yat 0.5 test
#449 Add tests to check Concepts Peter request major yat 0.6 test
#407 add tTest::reset() function Peter enhancement minor yat 0.5 statistics
#530 add version output of doxygen in documentation_test.sh Peter request trivial yat 0.6 test
#742 add void constructors to compose functor Peter request major yat 0.11 utility
#36 add weights to CrossSplitter Peter defect major classifier
#38 add weights to SVM (kernel) Peter defect major classifier
#929 Aligner::Cigar::begin(void) and ::end(void) are not implemented Peter defect major yat 0.16.2 utility
#962 Aligner::Cigar(string) constructor Jari Häkkinen request major yat 0.19 utility
#780 Aligner vertical and horizon gap Peter enhancement minor yat 0.12 documentation
#445 All iterators with value type `DataWeight` should be weighted Peter request major yat 0.5 utility
#799 allow conversion in get(map, key) Peter enhancement major yat 0.13 utility
#911 allow multiple arguments to yat-config Peter request minor yat 0.17 build
#836 allow operator*(const Matrix&, const Matrix&) Peter request major yat 0.15 utility
#654 allow silent-rules? Peter request minor yat 0.8 build
#544 allow --without-boost, --without-gsl and --without-blas Peter request trivial yat 0.6 build
#491 allow --without in yat.m4 Peter request major yat 0.6 build
#551 alpha_var() and beta_var() in regression::Linear claims to return standard deviation Peter defect minor yat 0.6 documentation
#637 Always detect `--help` option Peter enhancement major yat 0.8 utility
#452 analytical p-value for KS-statistics Peter request minor yat 0.5 statistics
#25 approximative calculation of p-value in Fisher's exact test Peter enhancement minor yat 0.2 statistics
#567 assert(false) in EnsembleBuilder::test_data(const KernelLookup&, size_t) Peter defect major yat 0.5.6 classifier
#749 asserts are turned on (default) Peter defect minor yat 0.10.2 build
#575 assignment of FileUtil Peter request major yat 0.6 utility
#840 assignment of VectorMutable does not compile Peter defect major yat 0.14 utility
#697 attribute not updated in getline(istream&, GFF&) Peter defect major yat 0.8.1 omic
#354 automake and COPYING Jari Häkkinen request trivial yat 0.5 build
#361 Averager class does not support removal of data Jari Häkkinen enhancement major yat 0.5 statistics
#24 Averager classes should have constructors taking gslapi::vectors Peter enhancement major yat 0.3 (Public release) statistics
#246 Averager classes should have interface for Iterators Peter request major yat 0.4 statistics
#19 Averager.n() return unsigned Peter enhancement minor yat 0.3 (Public release) statistics
#709 Averager operator+= gives incorreect mean and variance Peter defect major yat 0.8.2 statistics
#43 AveragerPair return 'nan' for some member functions when no data has been added to it. Peter request major yat 0.3 (Public release) classifier
#128 Averagers should have interface against iterators Peter request major yat 0.4 statistics
#41 averager_test fails using compiler optimization flags Peter defect major statistics
#802 AveragerWeighted::n(void) returns NaN for empty object Peter specification minor yat 0.13 statistics
#574 avoid conflict in NEWS when merging patch release into trunk Peter enhancement trivial yat 0.6 build
#655 avoid expanding variables in yat.pc Peter request minor yat 0.8 build
#752 avoid installing header files conditionally Peter enhancement minor yat 0.11 omic
#129 avoid kernels in NCC Markus Ringnér request major yat 0.2 classifier
#505 avoid polluting commandline with -I/usr/include and -L/usr/lib Peter enhancement minor yat 0.6 build
#191 Avoid unnecessary vector copying in kNNI and WeNNI Jari Häkkinen enhancement minor yat 0.3 (Public release) utility
#287 avoid using dynamic_cast in Subset and SupervisedClassifer Peter specification critical yat 0.4 classifier
#435 avoid using -m64 if possible Jari Häkkinen enhancement minor yat 0.6 build
#456 avoid using namespace LT_ Peter defect trivial yat 0.5 build
#470 avoid using test::Suite::equal when comparing with value from file Peter defect minor yat 0.5 test
#386 AX_PATH_GSL doesn't check for GSL header files Peter defect trivial yat 0.6 build
#810 Bam::end() doesn't work when cigar contains BAM_CEQUAL and BAM_CDIFF Peter defect major yat 0.12.1 omic
#740 BamHeader::target_length(size_t) not implemented Peter defect major yat 0.10.1 omic
#776 BamHeader::tid incorrect at first call Peter defect major yat 0.11.1 omic
#784 BamPairIterator Peter request major yat 0.12 omic
#938 BamPairIterator does not pass test::Suite::input_iterator_test Jari Häkkinen defect trivial yat 0.18 test
#913 BamPairIterator sorted wrt first read Peter request major yat 0.18 omic
#739 bam_parse_region with yat interface Peter request major yat 0.11 omic
#806 bam pileup Peter request major yat 0.13 omic
#792 BamRead::flag is not implemented Peter defect major yat 0.12 omic
#764 BamReadIterator with invalid region Peter request major yat 0.11 omic
#743 BamRead::mtid is not implemented Peter defect minor yat 0.10.2 omic
#941 BamRead::sequence(2) speedup Peter enhancement minor yat 0.18 omic
#894 BamWriteIterator default constructor is declared but not implemented Peter defect major yat 0.14.4 omic
#883 Base class for multivariate regression Peter request major yat 0.15 regression
#542 behavior and documentation of SVM::predict are not consistent Peter defect major yat 0.5.5 classifier
#796 benjamini hochberg on unsorted range Peter request major yat 0.13 statistics
#730 binomial random number Peter request major yat 0.10 random
#410 /bin/sh: line 1: *.h: command not found Peter defect trivial yat 0.5 build
#102 bool is_weighted() function in DataLook2D Peter request major yat 0.2 classifier
#762 <boost/exception_ptr.hpp> in boost 1.41 problematic Peter request major yat 0.11 build
#943 boost/random/negative_binomial_distribution.hpp in boost 1.69.0 includes deprecated files Peter defect trivial yat 0.18 random
#663 boostrap silence error messages Peter enhancement major yat 0.7.2 build
#863 boost thread not detected Peter defect critical yat 0.13.1 build
#570 bootstrap fails after changeset:2083 Jari Häkkinen defect major yat 0.6 build
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