#571 |
several constructors in random.h are not declared explicit
|
Peter
|
request
|
major
|
yat 0.6
|
random
|
#572 |
GCC 4.3 complains about deprecated conversion from string constant to char*
|
Peter
|
defect
|
minor
|
yat 0.6
|
test
|
#573 |
extra dependency libs added in libyat.la
|
Peter
|
defect
|
major
|
yat 0.5.6
|
build
|
#574 |
avoid conflict in NEWS when merging patch release into trunk
|
Peter
|
enhancement
|
trivial
|
yat 0.6
|
build
|
#575 |
assignment of FileUtil
|
Peter
|
request
|
major
|
yat 0.6
|
utility
|
#576 |
improve docs of utility::is_equal
|
Peter
|
enhancement
|
trivial
|
yat 0.6
|
documentation
|
#578 |
DataWeight and DataWeightProxy do behave different
|
Peter
|
defect
|
major
|
yat 0.6
|
utility
|
#579 |
EnsembleBuilder::predict doesn't work
|
Peter
|
defect
|
critical
|
yat 0.5.6
|
classifier
|
#580 |
test and document iterator type in Centralizer
|
Peter
|
request
|
minor
|
yat 0.6
|
test
|
#581 |
test and document iterator type in ColumnNormalizer and RowNormalizer
|
Peter
|
request
|
minor
|
yat 0.6
|
test
|
#582 |
test and document iterator type in Gauss
|
Peter
|
request
|
minor
|
yat 0.6
|
test
|
#583 |
test and document iterator type in Spearman
|
Peter
|
request
|
minor
|
yat 0.6
|
test
|
#584 |
test and document iterator type in qQuantileNormalizer
|
Peter
|
defect
|
minor
|
yat 0.6
|
test
|
#585 |
test and document iterator type in Average
|
Peter
|
request
|
minor
|
yat 0.6
|
test
|
#586 |
test and document iterator type in Averager
|
Peter
|
defect
|
minor
|
yat 0.6
|
test
|
#587 |
test and document iterator type in AveragerWeighted
|
Peter
|
defect
|
minor
|
yat 0.6
|
test
|
#588 |
test and document iterator type in AveragerPair
|
Peter
|
request
|
minor
|
yat 0.6
|
test
|
#589 |
test and document iterator type in AveragerPairWeighted
|
Peter
|
request
|
minor
|
yat 0.6
|
test
|
#590 |
test and document iterator type in EuclideanDistance
|
Peter
|
request
|
minor
|
yat 0.6
|
test
|
#591 |
test and document iterator type in PearsonDistance
|
Peter
|
request
|
minor
|
yat 0.6
|
test
|
#592 |
test and document iterator type in Histogram
|
Peter
|
request
|
minor
|
yat 0.6
|
test
|
#593 |
test and document iterator type in KolmogorovSmirnov
|
Peter
|
request
|
minor
|
yat 0.6
|
test
|
#594 |
test and document iterator type in Smoother
|
Peter
|
request
|
minor
|
yat 0.6
|
test
|
#595 |
test and document iterator types in functions in statistics/utility.h
|
Peter
|
request
|
minor
|
yat 0.6
|
test
|
#596 |
test and document types in Container2DIterator
|
Peter
|
request
|
minor
|
yat 0.7
|
test
|
#597 |
test and document DataWeightProxy with trivial iterator
|
Peter
|
request
|
minor
|
yat 0.6
|
test
|
#598 |
test and document iterator type in StrideIterator
|
Peter
|
request
|
minor
|
yat 0.6
|
test
|
#599 |
document DataIterator and WeightIterator
|
Peter
|
request
|
major
|
yat 0.6
|
documentation
|
#600 |
test and document container type in merge
|
Peter
|
request
|
minor
|
yat 0.7
|
test
|
#601 |
test and document iterator type in sort_index
|
Peter
|
request
|
minor
|
yat 0.6
|
test
|
#602 |
test and document iterator type in inverse
|
Peter
|
request
|
minor
|
yat 0.6
|
test
|
#603 |
Upgrade boost version requirmeent to 1.35
|
Peter
|
discussion
|
critical
|
yat 0.6
|
test
|
#604 |
iterator_traits does not work when data_type is convertible to DataWeight
|
Peter
|
enhancement
|
major
|
yat 0.6
|
utility
|
#606 |
utility::WeightedIterator lacks default constructor
|
Peter
|
defect
|
major
|
yat 0.6
|
utility
|
#607 |
convenience function to get value from a const map&
|
Peter
|
request
|
major
|
yat 0.7
|
utility
|
#609 |
static_test.sh fails with 'CXX=c++-mp-4.3'
|
Peter
|
defect
|
major
|
yat 0.6
|
test
|
#612 |
Comparison functor for pointers
|
Peter
|
request
|
major
|
|
utility
|
#613 |
6 tests fail with old autotools
|
Peter
|
defect
|
major
|
yat 0.7
|
test
|
#614 |
yat macros do not work with Autoconf 2.59
|
Peter
|
defect
|
major
|
yat 0.6.1
|
m4
|
#616 |
cerrno exception class
|
Peter
|
request
|
major
|
yat 0.7
|
utility
|
#617 |
FileUtil::permission bug when file (in root dir) does not exist
|
Peter
|
defect
|
minor
|
yat 0.6.1
|
utility
|
#619 |
static_test should be skipped when no static libyat is built
|
Peter
|
enhancement
|
minor
|
yat 0.7
|
test
|
#622 |
no table in Container2D concept page
|
Peter
|
defect
|
trivial
|
yat 0.7
|
documentation
|
#623 |
StrideIterator<Concept2DIterator> fails boost concept check
|
Peter
|
defect
|
major
|
yat 0.7
|
utility
|
#624 |
add concept check class for concept DataIterator
|
Peter
|
request
|
minor
|
yat 0.7
|
utility
|
#625 |
add concept check class for concept Distance
|
Peter
|
request
|
minor
|
yat 0.7
|
utility
|
#626 |
add concept check class for concept Mutable_Container2D
|
Peter
|
request
|
minor
|
yat 0.7
|
utility
|
#627 |
add concept check class for concept Neighbor Weighting Method
|
Peter
|
request
|
minor
|
yat 0.7
|
utility
|
#628 |
doxygen shows private class (in CommandLine)
|
Peter
|
defect
|
minor
|
yat 0.7
|
documentation
|
#629 |
yat::random classes should comply with STL's concept Random Number Generator
|
Peter
|
enhancement
|
minor
|
yat 0.7
|
random
|
#630 |
HAVE_YAT is defined to /**/
|
Peter
|
enhancement
|
trivial
|
yat 0.7
|
m4
|
#631 |
normalizer::Centralizer doesnt work with unweighted input and weighted output
|
Peter
|
defect
|
major
|
yat 0.7
|
normalizer
|
#632 |
PtrCompare is a special case of compose_f_gx_hy
|
Peter
|
request
|
major
|
yat 0.7
|
utility
|
#633 |
test and docs for DataIterator requirements
|
Peter
|
enhancement
|
major
|
yat 0.7
|
utility
|
#634 |
test and document requirements for WeightedIterator
|
Peter
|
request
|
major
|
yat 0.7
|
test
|
#635 |
class for a Segment
|
Peter
|
discussion
|
major
|
yat 0.7
|
utility
|
#636 |
"make distclean; ./configure; make clean;" fails
|
Peter
|
defect
|
trivial
|
yat 0.7
|
build
|
#637 |
Always detect `--help` option
|
Peter
|
enhancement
|
major
|
yat 0.8
|
utility
|
#638 |
overflow in Fisher
|
Peter
|
defect
|
major
|
yat 0.6.3
|
statistics
|
#639 |
PCA on a Kernel Matrix
|
Peter
|
request
|
major
|
yat 0.7
|
utility
|
#640 |
SegmentMap
|
Peter
|
request
|
major
|
yat 0.7
|
utility
|
#644 |
doxygen 1.7.2 complains about YAT_DEPRECATE
|
Peter
|
defect
|
minor
|
yat 0.7
|
documentation
|
#645 |
cmd_error with 'prog: : invalid argument'
|
Peter
|
enhancement
|
trivial
|
yat 0.7
|
utility
|
#646 |
change name of tests from *_test to *.test
|
Peter
|
enhancement
|
trivial
|
yat 0.7
|
test
|
#647 |
Parsing GFF files
|
Peter
|
request
|
major
|
yat 0.8
|
omic
|
#648 |
compiler warnings with gcc 4.4
|
Peter
|
defect
|
minor
|
yat 0.7.1
|
build
|
#649 |
compilation error with gcc 3.4
|
Peter
|
defect
|
major
|
yat 0.7.1
|
build
|
#650 |
tests fail with old autotools
|
Peter
|
defect
|
major
|
yat 0.8
|
test
|
#652 |
mention provided funtors that work with Centralizer
|
Peter
|
enhancement
|
trivial
|
yat 0.8
|
normalizer
|
#654 |
allow silent-rules?
|
Peter
|
request
|
minor
|
yat 0.8
|
build
|
#655 |
avoid expanding variables in yat.pc
|
Peter
|
request
|
minor
|
yat 0.8
|
build
|
#656 |
convert numerical type to string
|
Peter
|
request
|
minor
|
yat 0.8
|
utility
|
#657 |
make srcdir and builddir siblings in maintainer-check
|
Peter
|
enhancement
|
trivial
|
yat 0.8
|
m4
|
#658 |
doxygen warns: 'Found \endcond command without matching \cond'
|
Peter
|
defect
|
trivial
|
yat 0.7.2
|
documentation
|
#659 |
yat_am_macros (re)create files every time autoconf is run
|
Peter
|
enhancement
|
minor
|
yat 0.8
|
m4
|
#660 |
median crashes on empty range
|
Peter
|
defect
|
minor
|
yat 0.7.2
|
statistics
|
#662 |
create test/environment.h with AC_CONFIG_HEADERS
|
Peter
|
enhancement
|
trivial
|
yat 0.8
|
build
|
#663 |
boostrap silence error messages
|
Peter
|
enhancement
|
major
|
yat 0.7.2
|
build
|
#664 |
Codon("ATG").amino_acid() returns '\0'
|
Peter
|
defect
|
major
|
yat 0.7.2
|
omic
|
#665 |
@PACKAGE_URL@ not replaced on thep.lu.se
|
Peter
|
defect
|
major
|
yat 0.7.3
|
documentation
|
#666 |
Tukey biweight estimator
|
Peter
|
request
|
major
|
yat 0.8
|
statistics
|
#667 |
documentation missing for namespace classifier
|
Peter
|
defect
|
minor
|
yat 0.7.3
|
documentation
|
#668 |
test for yat_am_macros
|
Peter
|
request
|
major
|
yat 0.8
|
test
|
#669 |
ROC::p_value segmentation fault
|
Peter
|
defect
|
major
|
yat 0.7.3
|
statistics
|
#670 |
yat_am_macros tests fail
|
Peter
|
defect
|
minor
|
yat 0.8
|
test
|
#671 |
Increase accuracy in Averager
|
Peter
|
enhancement
|
minor
|
yat 0.8
|
statistics
|
#672 |
DNA assignment from char
|
Peter
|
request
|
minor
|
yat 0.8
|
omic
|
#674 |
deprecate seed functions in random base classes (Discrete Continuous)?
|
Peter
|
defect
|
major
|
yat 0.8
|
random
|
#675 |
document how to turn off deprecate warnings
|
Peter
|
enhancement
|
minor
|
yat 0.8
|
documentation
|
#677 |
When to use approximation for ROC p-value
|
Peter
|
defect
|
minor
|
yat 0.8
|
statistics
|
#678 |
ROC::p_value_one_sided returns small p-value for small area
|
Peter
|
defect
|
major
|
yat 0.8
|
statistics
|
#679 |
erase elements from SegmentMap Segment Set
|
Peter
|
request
|
major
|
yat 0.8
|
utility
|
#680 |
mutable find function in SegmentTree
|
Peter
|
request
|
major
|
yat 0.8
|
utility
|
#681 |
Missing deprecated list
|
Peter
|
defect
|
minor
|
yat 0.8
|
documentation
|
#683 |
configure says no doxygen found when old doxygen is found
|
Peter
|
defect
|
trivial
|
yat 0.9
|
build
|
#684 |
compiler icpc complains about -pedantic
|
Peter
|
defect
|
minor
|
yat 0.8
|
build
|
#685 |
compiler warning about default argument in utility::load
|
Peter
|
defect
|
major
|
yat 0.8
|
utility
|
#686 |
KS for one class
|
Peter
|
request
|
major
|
yat 0.11
|
statistics
|
#688 |
ROC and minus 1.0 weights
|
Peter
|
request
|
major
|
yat 0.9
|
statistics
|
#689 |
replace one_sided_P with lower_P and upper_P
|
Peter
|
request
|
major
|
yat 0.11
|
statistics
|