Opened 3 months ago

Closed 2 months ago

#940 closed request (fixed)

add failure check in Fasta::fetch

Reported by: Peter Owned by: Peter
Priority: trivial Milestone: yat 0.18
Component: omic Version: trunk
Keywords: Cc:

Description

Currently Fasta::fetch does not check if underlying htslib function failed, but the ::fetch is a private function and in both places the function is called error checks are done. Some of this code is repeated, so it seems better to move into ::fetch. There is also a comment about throwing different exception class depending on type of error (code by -1 or -2).

Change History (2)

comment:1 Changed 2 months ago by Peter

Milestone: yat 0.x+yat 0.18
Status: newaccepted

comment:2 Changed 2 months ago by Peter

Resolution: fixed
Status: acceptedclosed

In 3887:

detect error from faidx_fetch_seq in ::fetch rather thasn in function calling ::fetch. closes #940

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