Timeline



Mar 31, 2020: Today

4:38 AM Changeset [3899] by Peter
avoid doxygen warnings with v1.8.5
4:02 AM Tickets #858,​869 batch updated by Peter
fixed: In 3898: […]
4:02 AM Changeset [3898] by Peter
closes #858 and #869

Mar 30, 2020: Yesterday

6:33 AM Changeset [3897] by Peter
refs #869 and #858
5:13 AM Ticket #943 (boost/random/negative_binomial_distribution.hpp in boost 1.69.0 ...) closed by Peter
fixed: In 3896: […]
5:13 AM Changeset [3896] by Peter
fixes #943, avoid compiler warning about deprecated boost header
3:26 AM Ticket #943 (boost/random/negative_binomial_distribution.hpp in boost 1.69.0 ...) created by Peter
I don't see the problem with boost 1.65.1 and according to …

Mar 29, 2020:

9:10 AM Changeset [3895] by Peter
miss missing source file for test; refs #869

Mar 27, 2020:

12:02 PM Changeset [3894] by Peter
extend DiscreteUniform? so it fulfills the requirements for …
10:43 AM Changeset [3893] by Peter
merge latest revision from stable-0.17 branch into trunk
10:12 AM Ticket #942 (DiscreteUniform::result_type is ambiguous) closed by Peter
fixed: In 3892: […]
10:12 AM Changeset [3892] by Peter
fixes #942
8:14 AM Ticket #942 (DiscreteUniform::result_type is ambiguous) created by Peter
DiscreteUniform inherits from both Discrete and …

Mar 26, 2020:

6:50 AM Ticket #933 (function to remove entry in VcfHeader) closed by Peter
fixed: In 3891: […]
6:50 AM Changeset [3891] by Peter
fixes #933
2:40 AM Changeset [3890] by Peter
Both HAVE_HTSLIB and have_htslib we AC_SUBST'd with different output, …

Mar 25, 2020:

11:40 AM Ticket #941 (BamRead::sequence(2) speedup) closed by Peter
fixed: In 3889: […]
11:40 AM Changeset [3889] by Peter
closes #941
6:08 AM Changeset [3888] by Peter
fix compilation errors in --with-htslib mode introduced in r3883, refs #939
5:41 AM Ticket #940 (add failure check in Fasta::fetch) closed by Peter
fixed: In 3887: […]
5:41 AM Changeset [3887] by Peter
detect error from faidx_fetch_seq in ::fetch rather thasn in function …
4:13 AM Changeset [3886] by Peter
add missing macros in intstall target; sort files alphabetically
4:06 AM Changeset [3885] by Peter
Lift out macro YAT_CHECK_HEADERS to its own file, yat_check_header.m4. …
1:49 AM Changeset [3884] by Peter
fix docs typo

Mar 24, 2020:

11:08 AM Ticket #939 (remove support for libbam) closed by Peter
fixed: In 3883: […]
11:08 AM Changeset [3883] by Peter
remove support for building against libbam (which allows us to remove …

Mar 17, 2020:

5:10 AM Ticket #941 (BamRead::sequence(2) speedup) created by Peter
In BamRead::sequence(string, vector<uint8_t>) there is a loop over …
2:31 AM Ticket #940 (add failure check in Fasta::fetch) created by Peter
Currently Fasta::fetch does not check if underlying htslib function …

Mar 16, 2020:

6:19 AM Ticket #939 (remove support for libbam) created by Peter
Support for libbam was deprecated in yat 0.14, released January 2017.
6:17 AM Ticket #938 (BamPairIterator does not pass test::Suite::input_iterator_test) closed by Peter
fixed
6:10 AM Changeset [3882] by Peter
correct docs
5:57 AM Changeset [3881] by Peter
correct PP guard names

Mar 13, 2020:

8:14 AM Changeset [3880] by Peter
In c++11 std::multiset<T>::erase(1) takes an ::iterator, whereas in …
1:02 AM Changeset [3879] by Peter
add missing file from r3878

Mar 12, 2020:

4:21 AM Ticket #913 (BamPairIterator sorted wrt first read) closed by Peter
fixed: In 3878: […]
4:21 AM Changeset [3878] by Peter
New class BamPairIterator2 that takes a sort range of bam reads as …
3:00 AM Ticket #938 (BamPairIterator does not pass test::Suite::input_iterator_test) created by Peter
The following line is commented out […] Trying to compile that …

Mar 5, 2020:

2:42 AM Changeset [3877] by Peter
add NEWS section for 0.17.1
2:41 AM Changeset [3876] by Peter
bump version to 0.17.1pre
2:40 AM Changeset [3875] by Peter
merge release 0.17 into trunk
2:20 AM Milestone yat 0.17 completed
This version is the first to be compatible with htslib v1.10.
2:19 AM SubversionCheckout edited by Peter
release 0.17 (diff)
2:18 AM WikiStart edited by Peter
release 0.17 (diff)
1:31 AM Changeset [3874] by Peter
tagging version 0.17
1:08 AM Changeset [3873] by Peter
updating copyright years
12:58 AM Changeset [3872] by Peter
Preparing release 0.17

Mar 3, 2020:

11:56 PM Ticket #936 (Scheduler skips jobs (sometimes)) closed by Peter
fixed

Mar 1, 2020:

11:46 PM Ticket #932 (squared norm of Vector) closed by Peter
fixed: In 3871: […]
11:46 PM Changeset [3871] by Peter
closes #932
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