Timeline



Mar 28, 2007:

12:30 AM Ticket #218 (config.h should be installed) created by Peter
config.h generated by configure is part of the library and should be …

Mar 27, 2007:

10:30 PM Changeset [832] by Peter
Refs #217 cleaning up makefile.am
10:28 PM Ticket #185 (make copyright statement uniform) closed by Peter
fixed
3:22 PM Changeset [831] by Peter
Refs #185.

Mar 24, 2007:

4:00 PM Ticket #217 (make check make dist make distcheck) created by Jari Häkkinen
Must work before release of 0.3. Moved to 0.4 due to unexpected …
3:54 PM Ticket #206 (is matrix:set(const matrix&) needed?) closed by Jari Häkkinen
fixed: (In [830]) Fixes #206.
3:54 PM Changeset [830] by Jari Häkkinen
Fixes #206.
3:30 PM Ticket #173 (Optimize return values from member functions of PCA and related classes) closed by Jari Häkkinen
fixed: (In [829]) Fixes #173.
3:30 PM Changeset [829] by Jari Häkkinen
Fixes #173.
3:20 PM Ticket #216 (PCA is lacking functionality) created by Jari Häkkinen
Currently, PCA only performs a decomposition if the number of rows is …

Mar 20, 2007:

12:22 PM Ticket #215 (weight information in InputRanker) created by Peter
Either provide sum of weights for each input, or perhaps average of …

Mar 19, 2007:

11:15 PM Ticket #151 (ConsensusInputRanker more flexible) closed by Peter
fixed: (In [828]) Generalized ConsenusInputRanker?, Fixes #151
11:15 PM Changeset [828] by Peter
Generalized ConsenusInputRanker?, Fixes #151
7:52 PM Changeset [827] by Peter
added Functors to be used in CIR. Refs #151
6:45 PM Ticket #135 (Update documentation on DataLookup2D and daughter classes) closed by Peter
fixed: (In [826]) documentation and some minor fixes Fixes #135
6:45 PM Changeset [826] by Peter
documentation and some minor fixes Fixes #135
6:04 PM Ticket #214 (test that all input output operator work together) created by Peter
Specifically MatrixLookupWeighted? but check that test exist for other …
1:48 PM Ticket #213 (should we remove minmax_index) closed by Peter
fixed: ChangeSet? [825] removed minmax functions and moved shuffle into vector.*
1:46 PM Changeset [825] by Peter
removed minmax functions and moved shuffle into vector.*
1:12 PM Changeset [824] by Peter
Moved Ensemble stuff in subset_egnerator_test to ensemble_test. Also …
12:03 PM Ticket #134 (BootstrapSampler) closed by Peter
fixed: (In [823]) BootstrapSampler?. Fixes #134
12:03 PM Changeset [823] by Peter
BootstrapSampler?. Fixes #134
9:50 AM Ticket #209 (svd_test uses operator|=) closed by Peter
invalid: I say no more.
12:44 AM Tickets #156,​212 batch updated by Peter
fixed: (In [822]) redesigned tTest fixes #212 and #156
12:44 AM Changeset [822] by Peter
redesigned tTest fixes #212 and #156

Mar 18, 2007:

11:18 PM Ticket #213 (should we remove minmax_index) created by Peter
implemented here …
5:44 PM Ticket #212 (change interface of tTest) created by Peter
Should be independent of the different containers. Use same design as …
5:35 PM Ticket #101 (separate Score functionality from heavy ammo) closed by Peter
fixed
5:00 PM Changeset [821] by Peter
Modified ROC class to use AUC class in calculation of ROC area. Refs #101
1:25 AM Ticket #211 (weighted ROC p-value does not equal permutation test p-value?) created by Peter
The title might not be true but it is not straight forward to work …

Mar 17, 2007:

10:54 PM Changeset [820] by Peter
Changed name again. ROCScore is now called AUC. Also fixed several …
2:21 AM Changeset [819] by Peter
1:55 AM Changeset [818] by Peter
It depends on the use case here, but I think I agree so hist_ is no …
1:55 AM Ticket #204 (Potentially dangerous usage of references to external objects in ...) closed by Peter
fixed: (In [818]) It depends on the use case here, but I think I agree so …
1:39 AM Ticket #143 (add access to InputRankers in ConsensusInputRanker) closed by Peter
fixed: (In [817]) Fixes #143
1:39 AM Changeset [817] by Peter
Fixes #143
1:11 AM Ticket #198 (add test for Distance classes) closed by Peter
fixed: (In [816]) test for Distance. Fixes #198
1:11 AM Changeset [816] by Peter
test for Distance. Fixes #198
1:10 AM Changeset [815] by Peter
added constructor for DataLookup1D from a utility::vector

Mar 16, 2007:

11:22 PM Ticket #210 (Distance should take DataLookupWeighted1D) created by Peter
relates to ticket:237 could be implemented in base class as a virtual …
10:21 PM Ticket #66 (Add GaussianKernelFunction_test) closed by Peter
fixed: (In [814]) fixes #66
10:21 PM Changeset [814] by Peter
fixes #66
9:52 PM Ticket #209 (svd_test uses operator|=) created by Peter
In svd_test there are code like […] operator=| performs a bitwise …
8:30 PM Ticket #57 (implement Naive Baysian Classifier) closed by Peter
fixed: (In [813]) Predict in NBC. Fixes #57
8:30 PM Changeset [813] by Peter
Predict in NBC. Fixes #57
2:02 AM Changeset [812] by Peter
implemented NBC predict. Have to check what happens in the weighted …
2:00 AM Changeset [811] by Peter
dox
12:31 AM Changeset [810] by Jari Häkkinen
Changed to obey the general wisdom: If you write the same code snipet …
12:14 AM Ticket #208 (Update Requirements on wiki:start) created by Peter
What is needed to use yat? A compiler is not really enough is it? …

Mar 15, 2007:

11:47 PM Ticket #207 (Doxygen documentation style) created by Jari Häkkinen
I though there was a consensus on using the doxygen documentation …
11:44 PM Changeset [809] by Jari Häkkinen
Fixed spelling.
11:42 PM WikiStart edited by Jari Häkkinen
Added link to the CodingStyle? page (diff)
9:07 PM Ticket #205 (resize matrix) closed by Peter
fixed: (In [808]) previous argument was invalid, but here is an …
9:07 PM Changeset [808] by Peter
previous argument was invalid, but here is an implementation. Fixes #205
8:07 PM Ticket #206 (is matrix:set(const matrix&) needed?) created by Peter
Since the new implementation of assignment operator, I wonder if set …
8:02 PM Ticket #205 (resize matrix) created by Peter
I would like to have a resize function. In principle one can use …
7:24 PM Ticket #183 (Doxygen first page) closed by Peter
fixed: (In [807]) Ok, no comments from enyone so I assume it is ok to remove …
7:24 PM Changeset [807] by Peter
Ok, no comments from enyone so I assume it is ok to remove the list of …

Mar 14, 2007:

12:17 PM Changeset [806] by Peter
removed test as well :O
12:12 PM Changeset [805] by Peter
removed Option and Commandline. Not mature enough for a release. …
12:03 PM Changeset [804] by Peter
Creating a Sandbox
11:58 AM Changeset [803] by Peter
removed Microarray namespce and its conents

Mar 13, 2007:

1:05 PM Changeset [802] by Peter
removed styles sheet in config
12:52 PM Changeset [801] by Peter
and forgot another thing
12:37 PM Changeset [800] by Peter
3:06 AM Ticket #196 (Propagate version number to doxygen.config using the make system.) closed by Peter
fixed: (In [799]) NOTE: you will probably need to rerun configure to create …
3:06 AM Changeset [799] by Peter
NOTE: you will probably need to rerun configure to create directory …
12:53 AM Ticket #186 (DiscreteUniform::operator(u_long) problem checking bounds.) closed by Jari Häkkinen
worksforme: This is not an issue.
12:52 AM Changeset [798] by Jari Häkkinen
Removed unnecessary #include. Added tests for random number distributions.
12:51 AM Ticket #204 (Potentially dangerous usage of references to external objects in ...) created by Jari Häkkinen
At approximately line 460 in source:trunk/yat/random/random.h there is …

Mar 12, 2007:

11:53 PM Ticket #191 (Avoid unnecessary vector copying in kNNI and WeNNI) closed by Jari Häkkinen
fixed: (In [797]) Fixes #191. This is the best that can be done with the …
11:53 PM Changeset [797] by Jari Häkkinen
Fixes #191. This is the best that can be done with the current design.
11:18 PM Ticket #201 (const matrix& matrix::operator*=(const matrix& other)) closed by Jari Häkkinen
fixed: (In [796]) Fixes #201.
11:18 PM Changeset [796] by Jari Häkkinen
Fixes #201.
1:48 PM Changeset [795] by Peter
confusing to use argv[0] since it is nout test/vector_test but rather …
1:45 PM Ticket #203 (tests don't compile) closed by Peter
worksforme
12:43 PM Ticket #203 (tests don't compile) created by Peter
12:37 PM Changeset [794] by Peter
making yat compile

Mar 11, 2007:

4:40 PM Ticket #193 (Serious flaw: matrix mutation functionality and view does not work properly) closed by Jari Häkkinen
fixed: (In [793]) Fixes #193. Last test for the new functionality added to matrix.
4:40 PM Changeset [793] by Jari Häkkinen
Fixes #193. Last test for the new functionality added to matrix.
1:14 AM Changeset [792] by Jari Häkkinen
Addresses #193. matrix now works as outlined in the ticket discussion. …
1:12 AM Changeset [791] by Jari Häkkinen
Addresses #193. Added missing implementations.

Mar 10, 2007:

10:25 PM Ticket #202 (utility::matrix has internal support for const matrix views but there ...) created by Jari Häkkinen
10:19 PM Ticket #201 (const matrix& matrix::operator*=(const matrix& other)) created by Jari Häkkinen
The blas_matrix_ treatment is dangerous. If memory already allocated …
9:49 PM Changeset [790] by Jari Häkkinen
Addresses #193. Fixing doxygen docs, and operator=.
9:07 PM Changeset [789] by Jari Häkkinen
Addresses #193. vector now works as outlined here. Added some …
8:59 PM Changeset [788] by Jari Häkkinen
Improved comparison operator and equal function doxygen doc. Added for …

Mar 9, 2007:

9:02 PM trac_usage edited by Jari Häkkinen
Added iCalendar support information link. (diff)
10:40 AM Changeset [787] by Peter
removed v_const in vector since it never used for anything but only …
10:38 AM Changeset [786] by Peter
added a test in vector_test

Mar 8, 2007:

10:12 AM Changeset [785] by Peter
I think it is clearer if gsl_vector_const_view is declared as const …

Mar 6, 2007:

5:02 PM Changeset [784] by Jari Häkkinen
References #155. Removed potential null pointer usage. Some unwanted …

Mar 5, 2007:

10:45 PM Ticket #155 (Current vector implementation can cause "unexpected" runtime aborts if ...) closed by Jari Häkkinen
fixed: (In [783]) Fixes #155. Added asserts to check vectors in all non-const …
10:45 PM Changeset [783] by Jari Häkkinen
Fixes #155. Added asserts to check vectors in all non-const functions …
10:17 PM Ticket #195 (minimize interface to vector) closed by Jari Häkkinen
fixed: (In [782]) Fixes #195.
10:17 PM Changeset [782] by Jari Häkkinen
Fixes #195.
8:44 PM Changeset [781] by Peter
changing name to ROCScore and also added some cassert includes
8:30 PM Changeset [780] by Jari Häkkinen
Fixed exception message.
7:58 PM Changeset [779] by Peter
Refs #101

Mar 4, 2007:

2:20 PM Changeset [778] by Peter
added ROCscore class. refs #101
1:34 PM Changeset [777] by Peter
Changed Fisher interface dramatically. No longer inherited from Score. …
12:18 PM Changeset [776] by Jari Häkkinen
Fixed typos.

Mar 2, 2007:

12:53 AM Ticket #200 (utility::vector add function could be operator+=) closed by Jari Häkkinen
fixed: (In [775]) Fixes #200.
12:53 AM Changeset [775] by Jari Häkkinen
Fixes #200.

Mar 1, 2007:

10:52 PM Ticket #194 (minimize interface to matrix) closed by Jari Häkkinen
fixed: (In [774]) Fixes #194.
10:52 PM Changeset [774] by Jari Häkkinen
Fixes #194.
10:18 PM Ticket #200 (utility::vector add function could be operator+=) created by Jari Häkkinen
The functions below look pretty much like operator+=, don't they? …
9:20 PM Ticket #97 (copyright in test source) closed by Jari Häkkinen
fixed: The issue has already been resolved.
1:51 AM Ticket #138 (utility::matrix add function could be operator+=) closed by Jari Häkkinen
fixed: (In [773]) Fixes #138. Removed add, sub, scale and added appropriate …
1:51 AM Changeset [773] by Jari Häkkinen
Fixes #138. Removed add, sub, scale and added appropriate operators.
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