Timeline



Sep 9, 2008:

11:22 PM Ticket #436 (Change license to GPL 3) closed by Jari Häkkinen
fixed
11:20 PM DownloadPage edited by Jari Häkkinen
Addresses ticket:436 (diff)
11:19 PM WikiStart edited by Jari Häkkinen
Addresses ticket:436 (diff)
11:17 PM Changeset [1486] by Jari Häkkinen
Addresses #436.
11:15 PM Ticket #436 (Change license to GPL 3) created by Jari Häkkinen
Related to ticket:354
7:07 PM Changeset [1485] by Peter
adding explicit keyword
7:01 PM Changeset [1484] by Peter
refs #396
6:03 PM Changeset [1483] by Peter
refs #396 - removing a constructor in MatrixLookupWeighted? - needed to …
3:39 PM Changeset [1482] by Peter
refs #396 stupid implementation of constructors - copying should be …
2:41 PM Changeset [1481] by Peter
fixed broken cross-reference
1:29 PM Ticket #435 (avoid using -m64 if possible) created by Peter
related to ticket:349 When using atlas, a -m64 flag is always set …
1:24 PM Changeset [1480] by Peter
adding function to get free args - refs #413
1:11 PM Ticket #405 (yat-config --cppflags return -DNDEBUG) closed by Peter
fixed: (In [1479]) fixes #405 Setting AM_*FLAGS in configure. There are two …
1:11 PM Changeset [1479] by Peter
fixes #405 Setting AM_*FLAGS in configure. There are two paths to …

Sep 6, 2008:

8:55 PM Changeset [1478] by Peter
reverting [1474] as original docs were correct. Clarified that SVD …

Sep 4, 2008:

9:15 PM Changeset [1477] by Peter
adding some tests
3:51 PM Changeset [1476] by Peter
fixes #300 - I simply removed the sorting
3:51 PM Ticket #300 (PCA sorts eigen vectors using N*N algo) closed by Peter
fixed: (In [1476]) fixes #300 - I simply removed the sorting
3:06 PM Changeset [1475] by Peter
it's just about style
1:43 PM Changeset [1474] by Peter
corrected docs of SVD

Sep 3, 2008:

6:50 PM Changeset [1473] by Peter
added some docs about what and when x are thrown in Local
6:46 PM Changeset [1472] by Peter
fitting a Local with no data is impossible so added a throw in that case
6:29 PM Ticket #434 (Vector::Vector(0) crashes) created by Peter
Vector(0) crashes with […] Shouldn't Vector(0) behave like …

Sep 2, 2008:

9:30 PM Ticket #433 (predict in regression::Local) created by Peter
After training a Local using the fit function I would like to use …
8:24 PM Changeset [1471] by Peter
fixes #20
8:24 PM Ticket #20 (implement WilcoxonFoldChange) closed by Peter
fixed: (In [1471]) fixes #20
7:46 PM Changeset [1470] by Peter
7:21 PM Changeset [1469] by Peter
stray trac.thep
5:32 PM Ticket #432 (version.h is distributed) created by Peter
version.h is created (by configure) from version.h.in so no reason to …
4:57 PM Changeset [1468] by Peter
fixes #413
4:57 PM Ticket #413 (Commandline: args must be associated with an option) closed by Peter
fixed: (In [1468]) fixes #413
12:57 PM Changeset [1467] by Peter
fixing typ matrix -> Matrix
12:50 PM Ticket #417 (prefer $(macro) rather than @substitutions@ in Makefile.am) closed by Peter
invalid: We had no @subs@ in Makefile.am
5:48 AM Changeset [1466] by Peter
refs #413
5:17 AM Ticket #418 (OptionArg<double> doesnt allow negative numbers) closed by Peter
fixed: (In [1465]) fixes #418
5:17 AM Changeset [1465] by Peter
fixes #418

Sep 1, 2008:

11:39 PM Changeset [1464] by Peter
fixing so we are testing ColumnNormalizer?
11:34 PM Changeset [1463] by Peter
fixing compilation errors
11:27 PM Changeset [1462] by Peter
adding ColumnNormalizer?
8:19 AM WikiStart edited by Jari Häkkinen
Clarified trunk docs update frequency. (diff)

Aug 31, 2008:

8:59 PM Changeset [1461] by Peter
dox typo
7:36 PM Changeset [1460] by Peter
just to conform to gnu coding standards
3:48 PM Ticket #431 (AC_CHECK_HEADERS([unistd.h])) closed by Peter
fixed: (In [1459]) Cleaning up in configure.ac. Removed a couple of macros …
3:47 PM Ticket #430 (AC_C_INLINE and -DHAVE_INLINE) closed by Peter
fixed: (In [1459]) Cleaning up in configure.ac. Removed a couple of macros …
3:46 PM Changeset [1459] by Peter
Cleaning up in configure.ac. Removed a couple of macros that were C …

Aug 30, 2008:

9:41 PM Changeset [1458] by Peter
moving LFS test to separate file so skipping the test (when using …
5:13 AM Ticket #416 (Move normalization functions/classes to a new directory) closed by Peter
fixed
5:11 AM Ticket #426 (FileUtil does not compile on Tiger) closed by Peter
fixed: (In [1457]) fixes #426 - skipping test of LFS when configure option …
5:11 AM Changeset [1457] by Peter
fixes #426 - skipping test of LFS when configure option …
4:44 AM Changeset [1456] by Peter
adding test - refs #426

Aug 29, 2008:

10:01 PM Changeset [1455] by Peter
refs #426 added a ac_macro that adds what is needed in config.h. I …
9:17 PM Changeset [1454] by Peter
fixes #429 - the problem was that the implementation had been moved to …
9:17 PM Ticket #429 (Linear::r2(void) not implemented) closed by Peter
fixed: (In [1454]) fixes #429 - the problem was that the implementation had …
5:41 PM Changeset [1453] by Peter
some docs

Aug 28, 2008:

11:48 PM Changeset [1452] by Peter
docs typo
10:46 PM Changeset [1451] by Peter
fixes #407
10:46 PM Ticket #407 (add tTest::reset() function) closed by Peter
fixed: (In [1451]) fixes #407
10:28 PM Changeset [1450] by Peter
adding reset function in regression::Local
8:11 PM Ticket #431 (AC_CHECK_HEADERS([unistd.h])) created by Peter
what is that macro doing? It is checking if that header is available, …
8:07 PM Ticket #430 (AC_C_INLINE and -DHAVE_INLINE) created by Peter
related to ticket:405 We use macro AC_C_INLINE to check if inline is …
5:48 PM Changeset [1449] by Peter
docs
5:39 PM Ticket #429 (Linear::r2(void) not implemented) created by Peter
5:08 PM Changeset [1448] by Peter
fixed typo
4:56 AM Changeset [1447] by Peter
Changed the interface of QuantileNormalizer?. The interface now has one …
4:51 AM Changeset [1446] by Peter
refs #426 make it compile on Tiger - but removed the Large File Support
12:53 AM Changeset [1445] by Peter
adding Centralizer
12:51 AM Ticket #428 (yat.m4 and yat-config only work when installed) created by Peter
Perhaps we should add support for having yat as a bundled package???

Aug 27, 2008:

10:40 PM Changeset [1444] by Peter
just for clarity
9:47 PM Changeset [1443] by Peter
fixes #420
9:47 PM Ticket #420 (typedef iterator_type in Range) closed by Peter
fixed: (In [1443]) fixes #420
9:25 PM Changeset [1442] by Peter
fixes #427 - modified blurp in README on this
9:25 PM Ticket #427 (docs generation needs doxygen 1.5 or later) closed by Peter
fixed: (In [1442]) fixes #427 - modified blurp in README on this
9:23 PM Changeset [1441] by Peter
modifying the ax_compare_version to make make it quiet. Using original …
9:20 PM Changeset [1440] by Peter
refs #427
4:56 PM Ticket #427 (docs generation needs doxygen 1.5 or later) created by Peter
We should point this out in README and try to check the version during …
4:19 PM Changeset [1439] by Peter
adding call to AC_CONFIG_MACRO_DIR macro

Aug 26, 2008:

11:34 PM Ticket #301 (NCC - how to calculate the centroid) closed by Jari Häkkinen
wontfix
11:03 PM Ticket #426 (FileUtil does not compile on Tiger) created by Peter
Error message: […] Looks like related to ticket:378 so I guess …
9:27 PM Ticket #425 (Implement qQuantile normalizer) created by Jari Häkkinen
The idea is to normalize each column in a matrix to match a target …
5:48 PM Changeset [1438] by Peter
Added title on main page (first_page.doxygen). Set the title to …
3:49 PM WikiStart edited by Jari Häkkinen
Fixed pdf-generation and updated links to the files. (diff)
3:42 PM Ticket #424 (Chapter 1 title in pdf file says 'Main Page') created by Jari Häkkinen
It should say something like 'yat 0.4'
2:52 PM WikiStart edited by Jari Häkkinen
Update link to 0.4 documentation. (diff)

Aug 25, 2008:

9:58 PM ReleaseProcedure edited by Peter
fixed typo (diff)
7:55 PM Changeset [1437] by Peter
merge patch release 0.4.2 to trunk. Delta 0.4.2-0.4.1
7:34 PM Changeset [1436] by Peter
commit for future patch release 0.4.3
7:30 PM WikiStart edited by Peter
(diff)
7:29 PM DownloadPage edited by Peter
(diff)
7:25 PM Changeset [1435] by Peter
Tagging version 0.4.2
7:23 PM yat-0.4.2.tar.gz.MD5 attached to DownloadPage by Peter
7:22 PM yat-0.4.2.tar.gz attached to DownloadPage by Peter
6:21 PM Changeset [1434] by Peter
Preparing for release 0.4.2
6:07 PM ReleaseProcedure edited by Peter
typo (diff)
5:23 PM Changeset [1433] by Peter
fixes #423
5:23 PM Ticket #423 (Local: x is not updated in fit function) closed by Peter
fixed: (In [1433]) fixes #423
5:06 PM Ticket #423 (Local: x is not updated in fit function) created by Peter
The variable x_ that is returned by x(void) function is not correctly …
4:40 PM Ticket #422 (add(first1, last1, first2) in regression::Local) created by Peter
In regression::local there is a member function `add(double, double); …
3:54 PM Changeset [1432] by Peter
refs #416 moving quantile normalizer to new dir. Also moved the …

Aug 24, 2008:

9:41 PM Ticket #421 (functor check for nan) created by Peter
a functor that return 0.0 if input is nan and 1.0 otherwise. This can …

Aug 22, 2008:

7:32 PM Ticket #420 (typedef iterator_type in Range) created by Peter
1:25 PM Ticket #419 (./configure: line 3353: echo: write error: Broken pipe) created by Peter

Aug 21, 2008:

10:29 PM Changeset [1431] by Peter
refs #418 - added a test for this bug. The test is not active in the …
9:52 PM Ticket #418 (OptionArg<double> doesnt allow negative numbers) created by Peter
needed for ticket:413 I get the following error: […] I've tried …
8:35 PM Changeset [1430] by Peter
added blurp in namespaces.doxygen - refs #416
8:03 PM Changeset [1429] by Peter
refs #416 - added directory and modified build
7:22 PM Changeset [1428] by Peter
dox correction
4:15 PM Ticket #417 (prefer $(macro) rather than @substitutions@ in Makefile.am) created by Peter
same as [http://dev.thep.lu.se/svndigest/ticket/348 svndigest …
8:19 AM Ticket #416 (Move normalization functions/classes to a new directory) created by Jari Häkkinen
We will probably have several normalization algorithms in yat. Move …
5:42 AM Ticket #32 (add sensitivity to SVM) closed by Peter
wontfix: This is not very useful except in the linear case. (see ticket:51) …
1:54 AM Changeset [1427] by Peter
refs #413 seems like those args are just ignored now. Commandline …
12:26 AM Ticket #414 (Commandline doesnt warn when adding two options with same name) closed by Peter
fixed: (In [1426]) fixes #414
12:26 AM Changeset [1426] by Peter
fixes #414

Aug 20, 2008:

10:40 PM Changeset [1425] by Peter
remove macro not being used anymore
9:12 PM Changeset [1424] by Peter
it is a bad habit to set environment variables before calling …
8:56 PM Changeset [1423] by Peter
implemented --libdir option in yat-config
8:43 PM Changeset [1422] by Peter
docs - fixes #366
8:43 PM Ticket #366 (specialize percentile (and thereby median indirectly) for weighted ...) closed by Peter
fixed: (In [1422]) docs - fixes #366
7:51 PM Ticket #415 (Merge 2D Container) created by Peter
related to ticket:150 It could look something like this: […] It …
7:45 PM Changeset [1421] by Peter
fixes #371
7:45 PM Ticket #371 (remove ax_prefix_config_h.m4) closed by Peter
fixed: (In [1421]) fixes #371
7:33 PM Changeset [1420] by Peter
fixing the weighted implementation of Percentiler - refs #366. Some …
2:01 PM Changeset [1419] by Peter
just removing a variable never used
1:15 AM Changeset [1418] by Peter
refs #366 - need to polish on some special cases

Aug 19, 2008:

6:16 PM Ticket #328 (Ticket for testing svn post-commit hook) closed by Jari Häkkinen
fixed
4:22 AM Changeset [1417] by Peter
fixed typo
12:00 AM Changeset [1416] by Peter
adding pp macro to conveinently compare version

Aug 18, 2008:

9:20 PM Ticket #414 (Commandline doesnt warn when adding two options with same name) created by Peter
I had the following code […] in which I think Commandline should …
4:51 PM Ticket #413 (Commandline: args must be associated with an option) created by Peter
Needs ticket:418 Sometimes it is useful to allow args with no option, …
2:04 PM Ticket #283 (m4 macro for users of yat) closed by Peter
fixed: (In [1415]) added text on yat-config - closes #283
2:04 PM Changeset [1415] by Peter
added text on yat-config - closes #283

Aug 17, 2008:

6:23 PM Changeset [1414] by Peter
adding some docs on m4 macro. This info is for users and because …

Aug 16, 2008:

6:45 PM Ticket #412 (Doxygen - Build redundancy) created by Peter
when adding an input for doxygen one needs to update both INPUT in …

Aug 15, 2008:

10:03 PM Changeset [1413] by Peter
refs #283 - added yat.m4 in "make install"
9:54 PM Changeset [1412] by Peter
yat autoconf macro For details on the macro see header in file. In …
7:57 PM Changeset [1411] by Peter
modified the example code showing how to let --version option override …

Aug 14, 2008:

7:40 PM Changeset [1410] by Peter
added missing version.h in Makefile.am
5:59 PM Changeset [1409] by Peter
corrected bug in parsing of argument and added error msg when arg is …

Aug 13, 2008:

7:59 PM Changeset [1408] by Peter
just to consistent
5:45 PM Changeset [1407] by Peter
fixing FU from prev ci

Aug 11, 2008:

8:48 PM Changeset [1406] by Peter
updating yat-config
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