Timeline



Sep 25, 2008:

11:42 PM Ticket #446 (skip documentation test rather that run it conditionally) created by Peter
documentation_test.sh should be skipped, .i.e., return 77 when doxygen …
9:31 PM Changeset [1536] by Peter
adding a Gauss normalizer
9:01 PM Changeset [1535] by Peter
fixing DataWeightProxy?
8:24 PM Changeset [1534] by Peter
fixed some bugs in DataWeight?
2:02 PM Changeset [1533] by Peter
refs #368 - introducing proxy class
12:06 AM Changeset [1532] by Peter
refs #368 - const version is now working

Sep 24, 2008:

11:47 PM Changeset [1531] by Peter
working on WeightedIterator? refs #368
6:50 PM Changeset [1530] by Peter
removing const in value_type - refs #444
6:18 PM Changeset [1529] by Peter
refs #444 fixing KernelLookup?
5:46 PM Changeset [1528] by Peter
refs #444 - started using boost::permutation_iterator for vector …
3:52 PM Changeset [1527] by Peter
first ci of WeightedIterator? (far from ready to fly) - refs #368
2:42 PM Changeset [1526] by Peter
refs #444. same as in [1525] but for DataLookupWeighted1D.
2:36 PM Changeset [1525] by Peter
refs #444 - simplifying code in DataLookupD by calling underlying …

Sep 23, 2008:

11:12 PM Ticket #445 (All iterators with value type `DataWeight` should be weighted) created by Peter
Is it possible to implement such a rule? There is a class …
10:49 PM Ticket #444 (iterators in lookups) created by Peter
go through how iterators are defined in lookups. Two issues: 1. …
7:49 PM Ticket #443 (Zscore should handle weighted iterators) closed by Peter
fixed: (In [1524]) fixes #443
7:49 PM Changeset [1524] by Peter
fixes #443
7:32 PM Changeset [1523] by Peter
fixes #442
7:32 PM Ticket #442 (Centralizer should handle weighted iterator) closed by Peter
fixed: (In [1523]) fixes #442
3:41 PM Changeset [1522] by Peter
passing by reference rather than by value

Sep 22, 2008:

12:30 AM Ticket #443 (Zscore should handle weighted iterators) created by Peter
related to ticket:442
12:28 AM Ticket #442 (Centralizer should handle weighted iterator) created by Peter
related to ticket:443

Sep 21, 2008:

7:54 PM Changeset [1521] by Peter
Adding a Zscore normalizer
6:53 AM Changeset [1520] by Peter
adding a RowNormalizer?
6:35 AM Changeset [1519] by Peter
speeding up QuantileNormalizer? by avoiding some copying and by only …
6:07 AM Changeset [1518] by Peter
changed implementation of a couple of normalizer so that operator() …

Sep 19, 2008:

11:21 PM Changeset [1517] by Peter
spelling
10:56 PM Changeset [1516] by Peter
correction of prev ci
10:53 PM Changeset [1515] by Peter
adding support for YAT_TEST_VERBOSE
9:58 PM Changeset [1514] by Peter
typo
6:50 PM Changeset [1513] by Peter
prefer…
4:37 PM Ticket #437 (Rank Normalization) closed by Peter
fixed: fixed in [1512]
4:29 PM Changeset [1512] by Peter
fixes #439 - and also took care of ties
3:18 PM Changeset [1511] by Peter
refs #437 modified test to reflect new spec
3:09 PM Ticket #437 (Rank Normalization) reopened by Peter
I think we should add half the equal weights as mentioned in …

Sep 18, 2008:

11:36 PM Ticket #419 (./configure: line 3353: echo: write error: Broken pipe) closed by Peter
wontfix: Ok, this seems to be a bug in AC_PROG_SED that has been fixed in …
8:58 PM Changeset [1510] by Peter
fixing docs

Sep 17, 2008:

10:56 PM Changeset [1509] by Peter
fixes #437 and added support for having known issues in test::Suite
10:56 PM Ticket #437 (Rank Normalization) closed by Peter
fixed: (In [1509]) fixes #437 and added support for having known issues in …
2:12 PM Changeset [1508] by Peter
refs #437
1:13 AM Changeset [1507] by Peter
preparing for weighted version - refs #437
12:53 AM Changeset [1506] by Peter
fixes #434
12:53 AM Ticket #434 (Vector::Vector(0) crashes) closed by Peter
fixed: (In [1506]) fixes #434

Sep 16, 2008:

7:03 PM Changeset [1505] by Peter
adding missing replacements in sed cmd
6:32 PM Ticket #441 (creation of yat-config and yat.pc ignores make args such as --prefix) closed by Peter
fixed: (In [1504]) fixes #441
6:32 PM Changeset [1504] by Peter
fixes #441
6:00 PM Ticket #441 (creation of yat-config and yat.pc ignores make args such as --prefix) created by Peter
If you try something like: make prefix=/home/local that argument …
5:43 PM Changeset [1503] by Peter
checking that compiler and link flags are supported by compiler and …

Sep 15, 2008:

9:12 PM Changeset [1502] by Peter
fixed typo in flag assignment
8:51 PM Changeset [1501] by Peter
typo
8:47 PM Ticket #367 (preprocessor guards for deprecated functions) closed by Peter
fixed: (In [1500]) Added structure to deprecate functions. I chose to use a …
8:47 PM Changeset [1500] by Peter
Added structure to deprecate functions. I chose to use a gcc style, …
4:09 PM Changeset [1499] by Peter
include yat.m4 in distribution

Sep 12, 2008:

9:17 PM Changeset [1498] by Peter
fixed bug in ColumnNormalizer?
8:30 PM Changeset [1497] by Peter
changing name to normalizer - closes #416
8:30 PM Ticket #416 (Move normalization functions/classes to a new directory) closed by Peter
fixed: (In [1497]) changing name to normalizer - closes #416
8:16 PM Ticket #416 (Move normalization functions/classes to a new directory) reopened by Peter
I've changed my mind regarding the name and will change to normalizer, …
5:44 PM Changeset [1496] by Peter
unweighted version of the Spearman Normalization. refs #437.
4:58 PM Changeset [1495] by Peter
adding since
4:15 AM Changeset [1494] by Peter
fixes #432
4:15 AM Ticket #432 (version.h is distributed) closed by Peter
fixed: (In [1494]) fixes #432
3:59 AM Changeset [1493] by Peter
got problems with yat.am in distcheck - easiest solution was to delete …
3:57 AM Ticket #384 (what are the dependcy on 'make doc') closed by Peter
invalid: docs are not generated in make dist nor in make install. However, …
3:15 AM Changeset [1492] by Peter
fixes #439
3:15 AM Ticket #439 (sort_index for iterators) closed by Peter
fixed: (In [1492]) fixes #439
12:41 AM Changeset [1491] by Peter
refs #439
12:10 AM Changeset [1490] by Peter
fixes #440 The bug was introduced in trunk after 0.4 release, so it …
12:10 AM Ticket #440 (StrideIterator - StrideIterator ignores the stride) closed by Peter
fixed: (In [1490]) fixes #440 The bug was introduced in trunk after 0.4 …

Sep 11, 2008:

9:04 PM Ticket #440 (StrideIterator - StrideIterator ignores the stride) created by Peter
8:18 PM Ticket #439 (sort_index for iterators) created by Peter
needed for #437
7:02 PM Ticket #438 (make doc will not regenerate docs when a file has been removed) created by Peter
I have the following case: test_documentation.sh failed because I …
5:34 PM Ticket #437 (Rank Normalization) created by Peter
needs #439 This a normalization that works on 1D containers, for …
12:12 AM Changeset [1489] by Peter
adding some props

Sep 10, 2008:

11:53 PM Changeset [1488] by Peter
fixed typo and added comment on license upgrade
10:41 AM Changeset [1487] by Jari Häkkinen
Addresses #436. GPL license copy reference should also be updated.

Sep 9, 2008:

11:22 PM Ticket #436 (Change license to GPL 3) closed by Jari Häkkinen
fixed
11:20 PM DownloadPage edited by Jari Häkkinen
Addresses ticket:436 (diff)
11:19 PM WikiStart edited by Jari Häkkinen
Addresses ticket:436 (diff)
11:17 PM Changeset [1486] by Jari Häkkinen
Addresses #436.
11:15 PM Ticket #436 (Change license to GPL 3) created by Jari Häkkinen
Related to ticket:354
7:07 PM Changeset [1485] by Peter
adding explicit keyword
7:01 PM Changeset [1484] by Peter
refs #396
6:03 PM Changeset [1483] by Peter
refs #396 - removing a constructor in MatrixLookupWeighted? - needed to …
3:39 PM Changeset [1482] by Peter
refs #396 stupid implementation of constructors - copying should be …
2:41 PM Changeset [1481] by Peter
fixed broken cross-reference
1:29 PM Ticket #435 (avoid using -m64 if possible) created by Peter
related to ticket:349 When using atlas, a -m64 flag is always set …
1:24 PM Changeset [1480] by Peter
adding function to get free args - refs #413
1:11 PM Ticket #405 (yat-config --cppflags return -DNDEBUG) closed by Peter
fixed: (In [1479]) fixes #405 Setting AM_*FLAGS in configure. There are two …
1:11 PM Changeset [1479] by Peter
fixes #405 Setting AM_*FLAGS in configure. There are two paths to …

Sep 6, 2008:

8:55 PM Changeset [1478] by Peter
reverting [1474] as original docs were correct. Clarified that SVD …

Sep 4, 2008:

9:15 PM Changeset [1477] by Peter
adding some tests
3:51 PM Changeset [1476] by Peter
fixes #300 - I simply removed the sorting
3:51 PM Ticket #300 (PCA sorts eigen vectors using N*N algo) closed by Peter
fixed: (In [1476]) fixes #300 - I simply removed the sorting
3:06 PM Changeset [1475] by Peter
it's just about style
1:43 PM Changeset [1474] by Peter
corrected docs of SVD

Sep 3, 2008:

6:50 PM Changeset [1473] by Peter
added some docs about what and when x are thrown in Local
6:46 PM Changeset [1472] by Peter
fitting a Local with no data is impossible so added a throw in that case
6:29 PM Ticket #434 (Vector::Vector(0) crashes) created by Peter
Vector(0) crashes with […] Shouldn't Vector(0) behave like …

Sep 2, 2008:

9:30 PM Ticket #433 (predict in regression::Local) created by Peter
After training a Local using the fit function I would like to use …
8:24 PM Changeset [1471] by Peter
fixes #20
8:24 PM Ticket #20 (implement WilcoxonFoldChange) closed by Peter
fixed: (In [1471]) fixes #20
7:46 PM Changeset [1470] by Peter
7:21 PM Changeset [1469] by Peter
stray trac.thep
5:32 PM Ticket #432 (version.h is distributed) created by Peter
version.h is created (by configure) from version.h.in so no reason to …
4:57 PM Changeset [1468] by Peter
fixes #413
4:57 PM Ticket #413 (Commandline: args must be associated with an option) closed by Peter
fixed: (In [1468]) fixes #413
12:57 PM Changeset [1467] by Peter
fixing typ matrix -> Matrix
12:50 PM Ticket #417 (prefer $(macro) rather than @substitutions@ in Makefile.am) closed by Peter
invalid: We had no @subs@ in Makefile.am
5:48 AM Changeset [1466] by Peter
refs #413
5:17 AM Ticket #418 (OptionArg<double> doesnt allow negative numbers) closed by Peter
fixed: (In [1465]) fixes #418
5:17 AM Changeset [1465] by Peter
fixes #418

Sep 1, 2008:

11:39 PM Changeset [1464] by Peter
fixing so we are testing ColumnNormalizer?
11:34 PM Changeset [1463] by Peter
fixing compilation errors
11:27 PM Changeset [1462] by Peter
adding ColumnNormalizer?
8:19 AM WikiStart edited by Jari Häkkinen
Clarified trunk docs update frequency. (diff)

Aug 31, 2008:

8:59 PM Changeset [1461] by Peter
dox typo
7:36 PM Changeset [1460] by Peter
just to conform to gnu coding standards
3:48 PM Ticket #431 (AC_CHECK_HEADERS([unistd.h])) closed by Peter
fixed: (In [1459]) Cleaning up in configure.ac. Removed a couple of macros …
3:47 PM Ticket #430 (AC_C_INLINE and -DHAVE_INLINE) closed by Peter
fixed: (In [1459]) Cleaning up in configure.ac. Removed a couple of macros …
3:46 PM Changeset [1459] by Peter
Cleaning up in configure.ac. Removed a couple of macros that were C …

Aug 30, 2008:

9:41 PM Changeset [1458] by Peter
moving LFS test to separate file so skipping the test (when using …
5:13 AM Ticket #416 (Move normalization functions/classes to a new directory) closed by Peter
fixed
5:11 AM Ticket #426 (FileUtil does not compile on Tiger) closed by Peter
fixed: (In [1457]) fixes #426 - skipping test of LFS when configure option …
5:11 AM Changeset [1457] by Peter
fixes #426 - skipping test of LFS when configure option …
4:44 AM Changeset [1456] by Peter
adding test - refs #426

Aug 29, 2008:

10:01 PM Changeset [1455] by Peter
refs #426 added a ac_macro that adds what is needed in config.h. I …
9:17 PM Changeset [1454] by Peter
fixes #429 - the problem was that the implementation had been moved to …
9:17 PM Ticket #429 (Linear::r2(void) not implemented) closed by Peter
fixed: (In [1454]) fixes #429 - the problem was that the implementation had …
5:41 PM Changeset [1453] by Peter
some docs

Aug 28, 2008:

11:48 PM Changeset [1452] by Peter
docs typo
10:46 PM Changeset [1451] by Peter
fixes #407
10:46 PM Ticket #407 (add tTest::reset() function) closed by Peter
fixed: (In [1451]) fixes #407
10:28 PM Changeset [1450] by Peter
adding reset function in regression::Local
8:11 PM Ticket #431 (AC_CHECK_HEADERS([unistd.h])) created by Peter
what is that macro doing? It is checking if that header is available, …
8:07 PM Ticket #430 (AC_C_INLINE and -DHAVE_INLINE) created by Peter
related to ticket:405 We use macro AC_C_INLINE to check if inline is …
5:48 PM Changeset [1449] by Peter
docs
5:39 PM Ticket #429 (Linear::r2(void) not implemented) created by Peter
5:08 PM Changeset [1448] by Peter
fixed typo
4:56 AM Changeset [1447] by Peter
Changed the interface of QuantileNormalizer?. The interface now has one …
4:51 AM Changeset [1446] by Peter
refs #426 make it compile on Tiger - but removed the Large File Support
12:53 AM Changeset [1445] by Peter
adding Centralizer
12:51 AM Ticket #428 (yat.m4 and yat-config only work when installed) created by Peter
Perhaps we should add support for having yat as a bundled package???

Aug 27, 2008:

10:40 PM Changeset [1444] by Peter
just for clarity
9:47 PM Changeset [1443] by Peter
fixes #420
9:47 PM Ticket #420 (typedef iterator_type in Range) closed by Peter
fixed: (In [1443]) fixes #420
9:25 PM Changeset [1442] by Peter
fixes #427 - modified blurp in README on this
9:25 PM Ticket #427 (docs generation needs doxygen 1.5 or later) closed by Peter
fixed: (In [1442]) fixes #427 - modified blurp in README on this
9:23 PM Changeset [1441] by Peter
modifying the ax_compare_version to make make it quiet. Using original …
9:20 PM Changeset [1440] by Peter
refs #427
4:56 PM Ticket #427 (docs generation needs doxygen 1.5 or later) created by Peter
We should point this out in README and try to check the version during …
4:19 PM Changeset [1439] by Peter
adding call to AC_CONFIG_MACRO_DIR macro

Aug 26, 2008:

11:34 PM Ticket #301 (NCC - how to calculate the centroid) closed by Jari Häkkinen
wontfix
11:03 PM Ticket #426 (FileUtil does not compile on Tiger) created by Peter
Error message: […] Looks like related to ticket:378 so I guess …
9:27 PM Ticket #425 (Implement qQuantile normalizer) created by Jari Häkkinen
The idea is to normalize each column in a matrix to match a target …
5:48 PM Changeset [1438] by Peter
Added title on main page (first_page.doxygen). Set the title to …
3:49 PM WikiStart edited by Jari Häkkinen
Fixed pdf-generation and updated links to the files. (diff)
3:42 PM Ticket #424 (Chapter 1 title in pdf file says 'Main Page') created by Jari Häkkinen
It should say something like 'yat 0.4'
2:52 PM WikiStart edited by Jari Häkkinen
Update link to 0.4 documentation. (diff)
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