Timeline



Feb 12, 2009:

7:07 PM Changeset [1797] by Peter
updating copyright statements
6:11 PM Changeset [1796] by Peter
adding docs that yat-config and yat.m4 only works with yat 0.5 (or newer).
2:35 PM Changeset [1795] by Jari Häkkinen
Updated make request in the end of the configure.ac

Feb 11, 2009:

6:04 PM Changeset [1794] by Peter
adding missing implementations
4:54 PM Changeset [1793] by Peter
added missing include
4:48 PM Changeset [1792] by Peter
corrected includes
4:25 PM Changeset [1791] by Peter
removed referenced by and references relations in doxygen output.

Feb 10, 2009:

10:37 PM Changeset [1790] by Peter
fixes #411
10:37 PM Ticket #411 (pkg-config doesn't work because missing file boost.pc) closed by Peter
fixed: (In [1790]) fixes #411
5:11 PM Changeset [1789] by Peter
Speeding up copying from Matrix to MatrixWeighted? using BinaryWeight?. …

Feb 9, 2009:

11:11 PM Changeset [1788] by Peter
Changed MatrixLookup::operator() to return const double& rather than …
11:11 PM Ticket #488 (Container2DIterator::dereference returns reference to temporary) closed by Peter
fixed: (In [1788]) Changed MatrixLookup::operator() to return const double& …
10:17 PM Ticket #488 (Container2DIterator::dereference returns reference to temporary) created by Peter
I have a: […] and get the following compiler warning: […]
9:43 PM Changeset [1787] by Peter
avoid copying in Vector istream constructor
9:35 PM Changeset [1786] by Peter
fixes #421
9:35 PM Ticket #421 (functor check for nan) closed by Peter
fixed: (In [1786]) fixes #421
1:00 AM ReleaseProcedure edited by Peter
moved version.m4 to m4/ in r1785 (diff)
12:32 AM Changeset [1785] by Peter
Moving m4 files to directory m4/. NOTE: this change will break …

Feb 8, 2009:

6:58 PM Changeset [1784] by Peter
refs #478. Added test with weighted target, and made 'missing values' …
6:50 PM Changeset [1783] by Peter
added include
6:49 PM Changeset [1782] by Peter
corrected includes and docs

Feb 6, 2009:

8:36 PM Changeset [1781] by Peter
I moved the warnings not to occur inside a AC_MSG_CHECKING ... …
8:36 PM Ticket #487 (output from yat.m4 is ugly) closed by Peter
fixed: (In [1781]) I moved the warnings not to occur inside a …
7:13 PM Changeset [1780] by Peter
remove calls to AC_REQUIRE not needed
7:12 PM Changeset [1779] by Peter
yathello should depend on yat.m4
5:15 PM Ticket #487 (output from yat.m4 is ugly) created by Peter
For example I get […] which could be prettier. I think we should …
2:28 PM Changeset [1778] by Peter
refs #478. Fixed so the tests for weighted qQN now are OK. To align …

Feb 5, 2009:

8:37 PM Changeset [1777] by Jari Häkkinen
Added missing include statement.
8:17 PM Changeset [1776] by Peter
corrected output from 'yat-config --link-libtool'
7:56 PM Changeset [1775] by Peter
refs #478 - added another test
4:48 PM Changeset [1774] by Peter
refs #478 - fixed bugs in test code... the test still fails though.
1:56 PM Changeset [1773] by Peter
adding a test to check that qQN give same result with weighted source …

Feb 4, 2009:

11:01 PM Ticket #387 (allow to disable configure run-time checks) closed by Peter
invalid: We no longer have runtime tests when cross-compiling but fall back to …
8:26 PM Changeset [1772] by Peter
typos
6:27 PM Changeset [1771] by Peter
rescaling index - refs #478
5:40 PM Changeset [1770] by Peter
In maintainer-check in yat_test_yat was not run since configure was …

Feb 3, 2009:

11:10 PM Ticket #486 (yat_m4_test.sh does not honor --prefix and friend set at make time) closed by Peter
fixed: closed in r1769 The test of YAT_CHECK_YAT macro is modified so it …
11:01 PM Changeset [1769] by Peter
Making cppflags -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -DNDEBUG private, …
9:04 PM Changeset [1768] by Jari Häkkinen
The ends are extrapolated not interpolated.
8:44 PM Changeset [1767] by Peter
reduce autoconf warnings: - replace macro AC_TRY_COMPILE - avoid …
4:59 AM Ticket #486 (yat_m4_test.sh does not honor --prefix and friend set at make time) created by Peter
yat_m4_test.sh is built at configure time and thus does not depend …
4:31 AM Changeset [1766] by Peter
adding srcdir

Feb 2, 2009:

8:34 PM Ticket #485 (yat-config --cppflags returns `-DGSL_RANGE_CHECK_OFF` and `-DNDEBUG`) closed by Peter
fixed: (In [1765]) Making cppflags -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF …
8:34 PM Changeset [1765] by Peter
Making cppflags -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -DNDEBUG private, …
4:39 PM Ticket #485 (yat-config --cppflags returns `-DGSL_RANGE_CHECK_OFF` and `-DNDEBUG`) created by Peter
[…] As a user I don't want to get -DNDEBUG defined. Especially …
1:10 PM Changeset [1764] by Peter
fixes #484
1:10 PM Ticket #484 (install-hook in build_support does not work on mac) closed by Peter
fixed: (In [1764]) fixes #484
12:25 PM Ticket #483 (install yat_add_flag.m4) closed by Peter
fixed: (In [1763]) fixes #483
12:25 PM Changeset [1763] by Peter
fixes #483

Feb 1, 2009:

11:48 PM Ticket #484 (install-hook in build_support does not work on mac) created by Peter
7:06 PM Ticket #483 (install yat_add_flag.m4) created by Peter
install m4 files created within yat so improvements can be propagated …

Jan 31, 2009:

12:32 AM Changeset [1762] by Peter
check for libm using macro provided by libtool. See LT_LIB_M for …

Jan 30, 2009:

11:56 PM Ticket #482 ($(ECHO) is not defined using libtool 2) closed by Peter
fixed: (In [1761]) fixes #482
11:56 PM Changeset [1761] by Peter
fixes #482
9:08 PM Changeset [1760] by Peter
@configure_input@ not needed for files created with AC_CONFIG_HEADER
6:32 PM Changeset [1759] by Peter
fixed typo
2:30 PM Ticket #482 ($(ECHO) is not defined using libtool 2) created by Peter
After an upgrade to libtool 2, I found that libtool.m4 (used by …
1:30 PM Changeset [1758] by Peter
fixed problem in bootstrap. My libtoolize was called on glibtoolize …

Jan 29, 2009:

5:04 PM Changeset [1757] by Peter
making bootstrap silent and allow caller tp pass args such as …

Jan 27, 2009:

11:35 PM Changeset [1756] by Peter
improved YAT_*_ADD_FLAG - if contains several words, loop over the …
7:54 PM Changeset [1755] by Peter
simplify code by using std::ceil - refs #425
5:20 PM Changeset [1754] by Peter
let configure define perl path in doxygen.config

Jan 26, 2009:

10:43 PM Changeset [1753] by Peter
grammar typo
6:13 PM Changeset [1752] by Peter
update Makefile.am to reflect move in r1708
5:41 PM Changeset [1751] by Peter
refs #478 - updated docs and simplified call to data_iterator and …
1:45 PM Changeset [1750] by Peter
added a compilation test for qQN::operator() with weighted iterators. …
1:36 PM Ticket #480 (missing operator- for DataIterator) closed by Peter
fixed: (In [1749]) fixes #480
1:36 PM Changeset [1749] by Peter
fixes #480
1:28 PM Changeset [1748] by Peter
changing precision in test

Jan 23, 2009:

7:37 PM Changeset [1747] by Peter
adding boost in version_test
5:59 PM Changeset [1746] by Peter
Merged patch release 0.4.3 to the trunk. Delta 0.4.3 - 0.4.2.
5:17 PM Milestone yat 0.4.3 completed
This is a bug fix release. See NEWS
5:04 PM WikiStart edited by Peter
update for release 0.4.3 (diff)
5:03 PM DownloadPage edited by Peter
update for release 0.4.3 (diff)
5:01 PM yat-0.4.3.tar.gz.MD5 attached to DownloadPage by Peter
4:59 PM yat-0.4.3.tar.gz attached to DownloadPage by Peter
4:58 PM Changeset [1745] by Peter
changes for future release 0.4.4
4:52 PM Changeset [1744] by Peter
Tagging version 0.4.3
3:20 PM Changeset [1743] by Peter
updating copyright statements
3:08 PM Changeset [1742] by Peter
Preparing release 0.4.3
12:22 AM Ticket #467 (disable implicit conversion between Vector and its View siblings) closed by Peter
fixed: Conversion from a temporary VectorView seems very tricky (see ticket …

Jan 22, 2009:

11:36 PM Ticket #481 (calling functions in Option before Commandline has been parsed should throw) closed by Peter
fixed: (In [1741]) fixes #481
11:36 PM Changeset [1741] by Peter
fixes #481
10:55 PM Ticket #481 (calling functions in Option before Commandline has been parsed should throw) created by Peter
Some functions in Option and daughter classes dont make sense prior …
2:02 PM Ticket #480 (missing operator- for DataIterator) created by Peter
I have this code snippet […] where the last line does not compile.

Jan 21, 2009:

2:03 PM Changeset [1740] by Peter
addresses #478 - implemented weighted normalization. Need to add test …
2:34 AM Ticket #479 (Ranger normalizers should return void) closed by Peter
fixed: (In [1739]) fixes #479 and removing some debug output
2:34 AM Changeset [1739] by Peter
fixes #479 and removing some debug output
2:13 AM Ticket #479 (Ranger normalizers should return void) created by Peter
Many of the normalizers do return a ResultIterator (the end of the …

Jan 20, 2009:

2:58 AM Changeset [1738] by Peter
added support for creation of an qQuantileNormalizer from a weighted …

Jan 19, 2009:

9:40 PM Changeset [1737] by Peter
addresses #478 - preparing for weighted version
3:26 PM Changeset [1736] by Peter
Changing the interface to work on ranges rather than Matrix. This …

Jan 16, 2009:

10:33 PM Changeset [1735] by Jari Häkkinen
Addresses #425. Taking care of some special cases. No iterative test …
8:20 PM Changeset [1734] by Peter
Added some docs. Also modified the comparison operators to return what …
7:12 PM Changeset [1733] by Jari Häkkinen
Improving qQuantileNormalizer docs.
5:25 PM Changeset [1732] by Peter
typo
4:31 PM Ticket #478 (Generalize qQuantileNormalizer to work also on weighted data) created by Peter
related to ticket:401 (QuantileNormalizer) How to define the …
3:50 PM Changeset [1731] by Jari Häkkinen
Addresses #425. 'make check' passes now, but there is still a problem …
3:45 PM Changeset [1730] by Jari Häkkinen
Improving error output.
3:14 PM Changeset [1729] by Jari Häkkinen
Producing nicer error message.
3:05 PM Changeset [1728] by Jari Häkkinen
Typo.

Jan 15, 2009:

11:10 PM Ticket #477 (compiler do optimize in --enable-debug mode) closed by Peter
wontfix: OK. Only reason not to optimize would be speed (when developing …
10:49 PM Changeset [1727] by Jari Häkkinen
Fixes #464. Final tests.
10:49 PM Ticket #464 (WeNNI does not handle NaNs well) closed by Jari Häkkinen
fixed: (In [1727]) Fixes #464. Final tests.
10:31 PM Ticket #477 (compiler do optimize in --enable-debug mode) created by Peter
If --enable-debug is given to ./configure we will set `AM_CXXFLAGS …
10:15 PM Ticket #476 (NNI algorithms return wrong number of rows not imputed) closed by Jari Häkkinen
fixed: (In [1726]) Fixes #476. Improved estimate() doc and added test on …
10:15 PM Changeset [1726] by Jari Häkkinen
Fixes #476. Improved estimate() doc and added test on estimate() …
5:57 PM Changeset [1725] by Jari Häkkinen
Addresses #464. Weight zero will kill NaNs? and Infs.
5:34 PM Ticket #476 (NNI algorithms return wrong number of rows not imputed) created by Jari Häkkinen
The estimate function of the NNI algos are supposed to return the …
3:32 PM Changeset [1724] by Jari Häkkinen
Fixes #466. GSL_error is now thrown on GSL errors. Last thing in this …
3:32 PM Ticket #466 (Add interface to GSL interpolation functionality) closed by Jari Häkkinen
fixed: (In [1724]) Fixes #466. GSL_error is now thrown on GSL errors. Last …
2:36 PM Changeset [1723] by Jari Häkkinen
Added missing include
2:12 PM Changeset [1722] by Jari Häkkinen
Addresses #466. Moved default contructor to be public.
2:00 PM Ticket #458 (documentation_test.sh check fails) closed by Jari Häkkinen
fixed
1:58 PM Changeset [1721] by Jari Häkkinen
Addresses #458. Added a paragraph on subversion, added information on …
6:51 AM Changeset [1720] by Peter
adding some tests that refs #474. The commented code should compile …

Jan 14, 2009:

10:19 PM Ticket #474 (create Vector from temporary VectorView fails) reopened by Peter
Similarily: […] does not compile. Likewise to mentioned above a …
4:45 PM Changeset [1719] by Jari Häkkinen
Added tests for qQuantileNormalizer.
4:42 PM Changeset [1718] by Jari Häkkinen
Addresses #425. Improved docs. Fixed a bug in the normalization.

Jan 13, 2009:

11:32 PM Changeset [1717] by Peter
improved(?) docs. Moved some docs from operator() to class docs.
10:21 PM Changeset [1716] by Jari Häkkinen
Addresses #425. Made class Partitioner private.
9:08 PM Changeset [1715] by Peter
minor simplification of expression
8:58 PM Changeset [1714] by Peter
left over
8:07 PM Changeset [1713] by Jari Häkkinen
Addresses #425. Added static_cast to get rid of compiler warnings. …
7:41 PM Changeset [1712] by Jari Häkkinen
Addresses #425. Added linear extrapolation at ends. Added …
5:46 PM Changeset [1711] by Peter
fixed doxygen warnings
5:35 PM Changeset [1710] by Peter
avoid repeating code
1:36 PM Ticket #467 (disable implicit conversion between Vector and its View siblings) reopened by Peter
I think we should allow implicit conversion from VectorView? to …
11:48 AM Changeset [1709] by Jari Häkkinen
Addresses #425. Changed partition function.
11:09 AM Changeset [1708] by Jari Häkkinen
Addresses #425
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