Ticket #1238: reference-times-grey.txt

File reference-times-grey.txt, 1.2 KB (added by Nicklas Nordborg, 13 years ago)

Reference measurements of other plug-ins on 'grey'

Line 
1Tests was done on a dedicated performance test machine (grey).
2Results should not be compared to results made on other computers.
3
4The test was made on a fresh installation of BASE 2.11 on
5MySQL 5.0.51a which was initialised with 1000 raw data sets
6following the instructions in
7http://base.thep.lu.se/wiki/Specifications/Test_procedures/Performance
8Eg. './test.sh performance -i 1000 raw'
9
10The following tests were made from the web interface. The
11main purpose of the tests are to keep the result as a reference
12to make sure that any improvements we can do in the
13BioAssaySetExporter doesn't affect other things.
14
15# = Number of assays
16T1 = First run
17T2 = Second run
18
19Create root bioassay set
20========================
21formula: Mean FG - Median BG
22
23#   T1  T2
24--------------------
2510  0.41  0.20
2620  1.10  1.17
2740  3.57  2.44
2880  6.045 7.33
29160 18.42 13.39
30320 31.45 36.57
31640 71.07 78.37
32
33
34Filter bioassay set
35===================
36formula: ch(1) > 0 && ch(2) > 0
37
38# T1  T2
39--------------------
4010  0.31  0.26
4120  0.46  0.41
4240  1.27  1.17
4380  1.42  2.39
44160 4.41  5.10
45320 12.55 12.18
46640 23.45 25.05
47
48Lowess normalization
49====================
50all parameters at default values
51
52# T1  T2
53--------------------
5410  2.42  1.49
5520  3.16  2.57
5640  5.15  4.55
5780  13.41 14.17
58160 32.16 25.01
59320 59.55 52.20
60