Ticket #1238: reference-times.txt

File reference-times.txt, 1.1 KB (added by Nicklas Nordborg, 13 years ago)

Reference measurements of other plug-ins

Line 
1Tests was done on my development machine (auster). Results
2should not be compared to results made on other computers.
3
4The test was made on a fresh installation of BASE 2.11 on
5MySQL 5.0.67 which was initialised with 100 raw data sets
6following the instructions in
7http://base.thep.lu.se/wiki/Specifications/Test_procedures/Performance
8Eg. './test.sh performance -n 100 raw'
9
10The following tests were made from the web interface. The
11main purpose of the tests are to keep the result as a reference
12to make sure that any improvements we can do in the
13BioAssaySetExporter doesn't affect other things.
14
15# = Number of assays
16T1 = First run
17T2 = Second run
18
19Create root bioassay set
20========================
21formula: Mean FG - Median BG
22
23#   T1  T2
24--------------------
2510  1.27  2.12
2620  3.19  3.53
2740  5.48  6.53
2880  16.55 12.13
29
30
31Filter bioassay set
32===================
33formula: ch(1) > 0 && ch(2) > 0
34
35# T1  T2
36--------------------
3710  1.27  0.43
3820  1.05  1.59
3940  3.18  2.53
4080  7.56  6.22
41
42
43Lowess normalization
44====================
45all parameters at default values
46
47# T1  T2
48--------------------
4910  5.46  -
5020  10.33 -
5140  23.36 -
5280  49.02 -
53