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Last change
on this file since 4361 was
4361,
checked in by Nicklas Nordborg, 15 years ago
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References #1077: Lowess normalization broken
Added script for finding and tagging experiments/bioassay sets that are affected by
this bug. Need to document this in the installation/update documentation. Basically it works like this:
cd <base_dir>/bin
./onetimefix.sh lowess_warn -u root -p root_password -f
This will find and display all experiments/bioassay sets that have used the LOWESS plug-in. The -f flag causes those experiements/bioassay sets to be tagged with FIX LOWESS.
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File size:
1.1 KB
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| 1 | @echo off |
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| 2 | REM $Id: run.bat,v 1.6 2004/10/27 15:39:47 nicklas Exp $ |
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| 3 | REM |
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| 4 | REM Copyright (C) 2006 Nicklas Nordborg |
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| 5 | REM |
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| 6 | REM This file is part of BASE - BioArray Software Environment. |
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| 7 | REM Available at http://base.thep.lu.se/ |
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| 8 | REM |
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| 9 | REM BASE is free software; you can redistribute it and/or modify it |
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| 10 | REM under the terms of the GNU General Public License as published by |
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| 11 | REM the Free Software Foundation; either version 2 of the License, or |
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| 12 | REM (at your option) any later version. |
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| 13 | REM |
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| 14 | REM BASE is distributed in the hope that it will be useful, but |
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| 15 | REM WITHOUT ANY WARRANTY; without even the implied warranty of |
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| 16 | REM MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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| 17 | REM General Public License for more details. |
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| 18 | REM |
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| 19 | REM You should have received a copy of the GNU General Public License |
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| 20 | REM along with this program; if not, write to the Free Software |
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| 21 | REM Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA |
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| 22 | REM 02111-1307, USA. |
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| 23 | REM ---------------------------------------- |
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| 24 | |
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| 25 | REM Set classpath |
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| 26 | call set_classpath.bat |
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| 27 | |
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| 28 | REM Execute OneTimeFix class |
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| 29 | java -server -cp %CP% net.sf.basedb.install.OneTimeFix %1 %2 %3 %4 %5 %6 %7 %8 %9 |
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