|
Last change
on this file since 4361 was
4361,
checked in by Nicklas Nordborg, 15 years ago
|
|
References #1077: Lowess normalization broken
Added script for finding and tagging experiments/bioassay sets that are affected by
this bug. Need to document this in the installation/update documentation. Basically it works like this:
cd <base_dir>/bin
./onetimefix.sh lowess_warn -u root -p root_password -f
This will find and display all experiments/bioassay sets that have used the LOWESS plug-in. The -f flag causes those experiements/bioassay sets to be tagged with FIX LOWESS.
|
-
Property svn:eol-style set to
native
-
Property svn:executable set to
*
-
Property svn:keywords set to
Id
|
|
File size:
986 bytes
|
| Line | |
|---|
| 1 | #!/bin/sh |
|---|
| 2 | # $Id: onetimefix.sh 4361 2008-07-01 11:43:59Z nicklas $ |
|---|
| 3 | # |
|---|
| 4 | # Copyright (C) 2006 Nicklas Nordborg |
|---|
| 5 | # |
|---|
| 6 | # This file is part of BASE - BioArray Software Environment. |
|---|
| 7 | # Available at http://base.thep.lu.se/ |
|---|
| 8 | # |
|---|
| 9 | # BASE is free software; you can redistribute it and/or modify it |
|---|
| 10 | # under the terms of the GNU General Public License as published by |
|---|
| 11 | # the Free Software Foundation; either version 2 of the License, or |
|---|
| 12 | # (at your option) any later version. |
|---|
| 13 | # |
|---|
| 14 | # BASE is distributed in the hope that it will be useful, but |
|---|
| 15 | # WITHOUT ANY WARRANTY; without even the implied warranty of |
|---|
| 16 | # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
|---|
| 17 | # General Public License for more details. |
|---|
| 18 | # |
|---|
| 19 | # You should have received a copy of the GNU General Public License |
|---|
| 20 | # along with this program; if not, write to the Free Software |
|---|
| 21 | # Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA |
|---|
| 22 | # 02111-1307, USA. |
|---|
| 23 | # |
|---|
| 24 | |
|---|
| 25 | # Import CLASSPATH($CP) |
|---|
| 26 | . ./set_classpath.sh |
|---|
| 27 | |
|---|
| 28 | # Execute OneTimeFix class |
|---|
| 29 | java -server -cp $CP net.sf.basedb.install.OneTimeFix $* |
|---|
Note: See
TracBrowser
for help on using the repository browser.
